Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d028413_P001 | nucleus |
| Zm00001d030364_P001 | nucleus |
| Zm00001d030737_P001 | nucleus |
| Zm00001d047921_P001 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038197_P001 | Maize | plastid | 82.2 | 69.78 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 25.85 | 35.06 |
| PGSC0003DMT400002549 | Potato | plastid | 25.85 | 32.28 |
| Zm00001d042560_P002 | Maize | plastid | 34.75 | 31.54 |
| KRH20638 | Soybean | nucleus | 27.97 | 30.84 |
| Zm00001d010264_P001 | Maize | plastid | 36.02 | 30.8 |
| KRH13283 | Soybean | nucleus | 27.12 | 30.19 |
| AT1G65620.1 | Thale cress | plastid | 25.42 | 30.15 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 25.42 | 29.7 |
| CDY16414 | Canola | nucleus, plastid | 25.42 | 29.7 |
| CDY46781 | Canola | nucleus, plastid | 25.42 | 29.7 |
| Solyc11g008830.1.1 | Tomato | plastid | 27.97 | 28.7 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 25.0 | 27.31 |
| KRG88909 | Soybean | nucleus | 23.31 | 25.7 |
| Zm00001d038013_P001 | Maize | mitochondrion | 20.76 | 25.13 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.34 | 24.12 |
| Zm00001d039694_P001 | Maize | plastid | 26.27 | 23.75 |
| Zm00001d033466_P001 | Maize | plastid | 19.92 | 22.27 |
| Zm00001d010978_P001 | Maize | plastid | 19.07 | 21.23 |
| Zm00001d028721_P001 | Maize | plastid | 20.76 | 20.85 |
| Zm00001d035498_P001 | Maize | plastid | 19.07 | 20.36 |
| Zm00001d033335_P001 | Maize | plastid | 24.15 | 20.28 |
| Zm00001d009823_P001 | Maize | plastid | 18.64 | 20.09 |
| Zm00001d047752_P001 | Maize | plastid | 19.49 | 19.25 |
| Zm00001d043036_P001 | Maize | cytosol | 19.07 | 18.99 |
| Zm00001d013732_P001 | Maize | plastid | 22.46 | 17.73 |
Protein Annotations
| EnsemblPlants:Zm00001d047521_P001 | EnsemblPlants:Zm00001d047521_T001 | EnsemblPlantsGene:Zm00001d047521 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF26 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQL06830.1 | SEG:seg |
| UniParc:UPI0008431E1B | UniProt:A0A1D6PAX1 | MapMan:15.5.24 | : | : | : |
Description
LOB domain-containing protein 6
Coordinates
chr9:-:133429142..133437808
Molecular Weight (calculated)
24406.0 Da
IEP (calculated)
8.478
GRAVY (calculated)
0.049
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPSASSVP PVVTTGSVVT PSLWPRRPPG GGSTVSADKF AHAHRVFGTS NVIKILNDLQ PYYQREDAVN SLIYEADMRV RNPVYGCIGV VSILQHCLLR
101: LKKALERASL ELSKYQVLDS LHKAAAAASA SVAVGSHGVA AAGMADFVGN AVPNNCTQNI VNVGHSTIAS INGAGPFMQQ DNFASVQMLA RSFEGENGAA
201: ARVGMNGGGG YGFAYSPAMG VGHGVVSGHV QQINGG
101: LKKALERASL ELSKYQVLDS LHKAAAAASA SVAVGSHGVA AAGMADFVGN AVPNNCTQNI VNVGHSTIAS INGAGPFMQQ DNFASVQMLA RSFEGENGAA
201: ARVGMNGGGG YGFAYSPAMG VGHGVVSGHV QQINGG
001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG
Arabidopsis Description
LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.