Factsheet for Zm00001d010264_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028413_P001	nucleus
Zm00001d030364_P001	nucleus
Zm00001d030737_P001	nucleus
Zm00001d047921_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042560_P002	Maize	plastid	52.54	55.77
Solyc03g063140.2.1	Tomato	nucleus, plastid	31.16	49.43
PGSC0003DMT400002549	Potato	plastid	31.88	46.56
AT1G65620.1	Thale cress	plastid	32.25	44.72
Bra039733.1-P	Field mustard	nucleus, plastid	32.25	44.06
CDY46781	Canola	nucleus, plastid	32.25	44.06
CDY16414	Canola	nucleus, plastid	32.25	44.06
Solyc11g008830.1.1	Tomato	plastid	33.33	40.0
VIT_00s0340g00090.t01	Wine grape	nucleus	31.16	39.81
KRH13283	Soybean	nucleus	30.43	39.62
KRH20638	Soybean	nucleus	30.07	38.78
KRG88909	Soybean	nucleus	28.26	36.45
Zm00001d038013_P001	Maize	mitochondrion	25.72	36.41
Zm00001d038197_P001	Maize	plastid	36.59	36.33
Zm00001d047521_P001	Maize	plastid	30.8	36.02
Zm00001d039694_P001	Maize	plastid	30.43	32.18
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.19	32.16
Zm00001d033335_P001	Maize	plastid	31.52	30.96
Zm00001d009823_P001	Maize	plastid	23.91	30.14
Zm00001d033466_P001	Maize	plastid	22.83	29.86
Zm00001d010978_P001	Maize	plastid	22.46	29.25
Zm00001d035498_P001	Maize	plastid	23.19	28.96
Zm00001d013732_P001	Maize	plastid	30.43	28.09
Zm00001d043036_P001	Maize	cytosol	23.55	27.43
Zm00001d047752_P001	Maize	plastid	22.1	25.52
Zm00001d028721_P001	Maize	plastid	21.38	25.11

Protein Annotations

EnsemblPlants:Zm00001d010264_P001	EnsemblPlants:Zm00001d010264_T001	EnsemblPlantsGene:Zm00001d010264	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301
PANTHER:PTHR31301:SF33	PFAM:PF03195	PFscan:PS50891	ProteinID:AQK93756.1	SEG:seg	UniParc:UPI000843292F
UniProt:A0A1D6FQ52	MapMan:15.5.24	:	:	:	:

Description

LBD-transcription factor 36Putative LOB domain-containing family protein

Coordinates

chr8:+:106551052..106551980

Molecular Weight (calculated)

28186.3 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.035

Length

276 amino acids

Sequence
(BLAST)

001: MAASSAPSSA VPAVSTAPVI TVASPPTGGG GSISGNGGGG GGSPCAACKL LRRKCQPDCM FAPYFPSDNP QKFVHVHRVF GASNVSKILN DLQPFQRQDA
101: VNSLAYEADM RIRDPVYGCV GVICILQRHL SLVRQELACA TYELSKYRQA EAAAASVAVG SHGAAAAAGM AEFVGNAVAN CPQTFMDVRH STAAAAIGGA
201: GGFMQEDNFS MQQMLAMTYE GEGSGAARVD MNGGGGYGFT YSPAAAMGAV EHGAVSGIGA AEQRGTIPEA QQDRRG

Best Arabidopsis Sequence Match ( AT1G65620.1 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.