Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d030737_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | Zm00001d030737_P001 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033335_P001 | Maize | plastid | 77.26 | 82.21 |
| EER93817 | Sorghum | plastid | 81.27 | 81.82 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 55.85 | 58.8 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 54.85 | 57.75 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 54.18 | 56.25 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 54.85 | 54.49 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 38.13 | 47.3 |
| KRH62409 | Soybean | nucleus | 30.43 | 42.92 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 34.78 | 42.45 |
| KRH53127 | Soybean | nucleus | 28.76 | 42.16 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 55.18 | 41.56 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 41.47 | 41.47 |
| PGSC0003DMT400002013 | Potato | nucleus | 39.8 | 41.46 |
| Solyc02g065150.1.1 | Tomato | nucleus | 40.13 | 41.24 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 40.13 | 41.1 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 38.8 | 40.42 |
| PGSC0003DMT400002011 | Potato | nucleus | 38.8 | 40.28 |
| KRH76950 | Soybean | nucleus | 39.46 | 38.82 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 36.79 | 38.19 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 40.13 | 38.1 |
| Zm00001d038013_P001 | Maize | mitochondrion | 24.41 | 37.44 |
| PGSC0003DMT400025959 | Potato | nucleus | 38.8 | 37.06 |
| KRH28509 | Soybean | nucleus | 38.13 | 37.01 |
| KRH57745 | Soybean | nucleus | 34.11 | 36.96 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.75 | 35.68 |
| AT5G66870.1 | Thale cress | nucleus | 36.12 | 34.5 |
| CDY49845 | Canola | nucleus, plastid | 34.78 | 33.33 |
| CDY52150 | Canola | nucleus, plastid | 34.78 | 32.91 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 33.11 | 32.89 |
| CDY12784 | Canola | nucleus, plastid | 36.79 | 32.74 |
| Zm00001d033466_P001 | Maize | plastid | 23.08 | 32.7 |
| Zm00001d042560_P002 | Maize | plastid | 28.43 | 32.69 |
| CDY01457 | Canola | nucleus, plastid | 36.79 | 32.54 |
| Bra012112.1-P | Field mustard | nucleus, plastid | 36.79 | 32.54 |
| CDX89590 | Canola | mitochondrion, nucleus | 31.77 | 30.84 |
| CDX68120 | Canola | mitochondrion, nucleus | 31.77 | 30.84 |
| Bra032153.1-P | Field mustard | mitochondrion, nucleus | 31.77 | 30.84 |
| Zm00001d010978_P001 | Maize | plastid | 21.74 | 30.66 |
| Zm00001d039694_P001 | Maize | plastid | 26.76 | 30.65 |
| Zm00001d010264_P001 | Maize | plastid | 28.09 | 30.43 |
| Zm00001d035498_P001 | Maize | plastid | 22.41 | 30.32 |
| CDY18621 | Canola | nucleus, plastid | 30.43 | 30.03 |
| CDX81360 | Canola | plastid | 33.11 | 29.55 |
| Zm00001d038197_P001 | Maize | plastid | 27.42 | 29.5 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 30.1 | 28.94 |
| Zm00001d047752_P001 | Maize | plastid | 22.74 | 28.45 |
| Zm00001d043036_P001 | Maize | cytosol | 22.07 | 27.85 |
| Zm00001d028721_P001 | Maize | plastid | 21.74 | 27.66 |
| Zm00001d009823_P001 | Maize | plastid | 20.07 | 27.4 |
| Bra037142.1-P | Field mustard | nucleus, plastid | 32.78 | 24.87 |
| Zm00001d047521_P001 | Maize | plastid | 17.73 | 22.46 |
Protein Annotations
| EMBL:BT063309 | EMBL:KJ727724 | EnsemblPlants:Zm00001d013732_P001 | EnsemblPlants:Zm00001d013732_T001 | EnsemblPlantsGene:Zm00001d013732 | EntrezGene:100382144 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF59 | PFAM:PF03195 |
| PFscan:PS50891 | ProteinID:AQK64253.1 | SEG:seg | UniParc:UPI0001948B95 | UniProt:C0P4U0 | MapMan:15.5.24 |
Description
LBD-transcription factor 27LOB domain-containing protein 28
Coordinates
chr5:-:18855513..18856412
Molecular Weight (calculated)
31797.5 Da
IEP (calculated)
7.343
GRAVY (calculated)
-0.368
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFASVH RIFGASNVSK LLNDLPAVQR EDAVNSLAYE AEARIRDPVY GCVSHISVLQ VRIRQVRDEL
101: VAARKELAAY IGPAAFTPFV ATPQQYHHQY AAGAGGGVPL ATGMGLAVGV GPQPHQQHGH PHQQQMMAHG QHLHHQHHLM AAAEAQQQLA LAAQVAREQD
201: VMMRQAVVYA HAVPGSGATV AVGPPDAVPY EGGFLFQQQH HQQPPSQAQT TVALTYQMEQ SPPPSSPGQS HSHPEVSQQK NTDGSDEGSG GGGLVPPPA
101: VAARKELAAY IGPAAFTPFV ATPQQYHHQY AAGAGGGVPL ATGMGLAVGV GPQPHQQHGH PHQQQMMAHG QHLHHQHHLM AAAEAQQQLA LAAQVAREQD
201: VMMRQAVVYA HAVPGSGATV AVGPPDAVPY EGGFLFQQQH HQQPPSQAQT TVALTYQMEQ SPPPSSPGQS HSHPEVSQQK NTDGSDEGSG GGGLVPPPA
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.