CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032153.1-P	Field mustard	mitochondrion, nucleus	100.0	100.0
CDX68120	Canola	mitochondrion, nucleus	100.0	100.0
AT2G23660.2	Thale cress	mitochondrion, nucleus	86.04	85.21
CDY20041	Canola	plastid	22.73	53.44
CDY49773	Canola	plastid	22.4	52.27
CDY03987	Canola	plastid	22.4	52.27
CDX83724	Canola	plastid	22.08	51.52
CDY13730	Canola	plastid	22.08	51.52
CDY72536	Canola	mitochondrion	22.4	50.0
CDY51008	Canola	mitochondrion	22.08	48.92
VIT_00s1247g00010.t01	Wine grape	nucleus	37.01	47.3
CDY16738	Canola	plastid	26.3	46.02
CDY48125	Canola	plastid	25.97	45.45
CDY68853	Canola	plastid	26.62	45.3
CDY69697	Canola	plastid	26.62	45.3
VIT_07s0197g00030.t01	Wine grape	nucleus	35.39	44.49
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	24.35	43.6
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	24.35	43.6
CDY46781	Canola	nucleus, plastid	28.57	43.56
CDY16414	Canola	nucleus, plastid	28.57	43.56
CDY66794	Canola	mitochondrion	23.05	43.56
CDY40054	Canola	mitochondrion	23.05	43.56
CDX81767	Canola	cytosol, nucleus, plastid	23.05	43.29
KRH62409	Soybean	nucleus	29.55	42.92
CDY50999	Canola	cytosol, mitochondrion, plastid	22.73	42.68
PGSC0003DMT400002013	Potato	nucleus	39.29	42.16
Solyc02g065150.1.1	Tomato	nucleus	39.61	41.92
VIT_07s0197g00020.t01	Wine grape	nucleus	39.61	41.78
KRH53127	Soybean	nucleus	27.6	41.67
PGSC0003DMT400002011	Potato	nucleus	38.64	41.32
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	38.96	40.13
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	37.01	39.72
CDY24027	Canola	mitochondrion	23.7	38.83
KRH57745	Soybean	nucleus	34.74	38.77
CDY10714	Canola	mitochondrion	23.7	38.62
CDY06285	Canola	nucleus, plastid	23.38	37.89
KRH28509	Soybean	nucleus	37.34	37.34
CDY49845	Canola	nucleus, plastid	37.66	37.18
CDY22713	Canola	plastid	23.05	37.17
PGSC0003DMT400025959	Potato	nucleus	37.66	37.06
CDY52150	Canola	nucleus, plastid	37.99	37.03
KRH76950	Soybean	nucleus	36.36	36.84
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	37.34	36.51
GSMUA_Achr6P04670_001	Banana	mitochondrion	33.77	36.11
CDY23903	Canola	plastid	22.73	35.35
CDY67958	Canola	plastid	22.73	35.35
CDY12784	Canola	nucleus, plastid	37.99	34.82
CDY01457	Canola	nucleus, plastid	37.99	34.62
CDX81360	Canola	plastid	36.36	33.43
CDY06988	Canola	plastid	21.43	32.84
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	30.19	32.75
CDY62454	Canola	plastid	22.73	32.26
Zm00001d033335_P001	Maize	plastid	29.22	32.03
CDX93609	Canola	nucleus	23.38	32.0
CDX77182	Canola	plastid	22.4	31.8
CDY15755	Canola	plastid	22.4	31.8
Zm00001d013732_P001	Maize	plastid	30.84	31.77
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	29.22	31.69
CDY04570	Canola	plastid	22.4	31.65
CDX95115	Canola	plastid	23.05	31.14
EER93817	Sorghum	plastid	29.87	30.98
TraesCS4A01G235100.1	Wheat	nucleus	28.9	30.9
CDX93178	Canola	cytosol, nucleus, plastid	22.73	30.84
CDY18621	Canola	nucleus, plastid	30.19	30.69
CDY31207	Canola	plastid	21.1	30.09
CDY24903	Canola	mitochondrion	22.4	29.87
HORVU4Hr1G013630.2	Barley	nucleus	28.9	29.57
CDY07604	Canola	mitochondrion	22.08	29.31
CDX83290	Canola	plastid	21.75	29.0
GSMUA_Achr2P17160_001	Banana	mitochondrion	28.25	28.9
CDY02059	Canola	mitochondrion	20.78	27.12
CDY10726	Canola	mitochondrion	20.78	27.12
Os03t0612400-00	Rice	cytosol, nucleus	31.49	24.43

Protein Annotations

EnsemblPlants:CDX89590	EnsemblPlantsGene:GSBRNA2T00149933001	InterPro:IPR004883	InterPro:LOB	InterPro:LOBD	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155	ProteinID:CDX89590
ProteinID:CDX89590.1	SEG:seg	UniParc:UPI00025447B7	MapMan:15.5.24	:	:

Description

BnaC04g36090D

Coordinates

chrLK031859:-:1456084..1457582

Molecular Weight (calculated)

34412.8 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.640

Length

308 amino acids

Sequence
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFIYVHKV FGASNVTKIL NDLPPPSRED AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT
101: AKEELAGYIG PDAVNPQQPY LPPLANNPPP NFMMAMEGMP HGVVPQGEPL IMREPNMPQH QHQPQDEQMQ LMGTDAHRMA AMILERGDQQ GMFNGYGIDN
201: NGSVTATGFN QMDVNDHTSG GSMSGPSLAL GSFGDAYQMG HETEHHISHD QLQTQLMLQP PLQEGQEQNE GQFLMQPMGQ ENLHEEEDEE ELEPPVKWRK
301: SESKEASY

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.