CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03987	Canola	plastid	95.45	95.45
CDY13730	Canola	plastid	91.67	91.67
CDY20041	Canola	plastid	90.15	90.84
CDX83724	Canola	plastid	90.15	90.15
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	90.15	74.84
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	55.3	67.59
Solyc02g086480.1.1	Tomato	plastid	68.18	60.4
KRG93235	Soybean	plastid	75.0	58.93
KRH56556	Soybean	nucleus, plastid	75.0	58.24
PGSC0003DMT400032875	Potato	plastid	68.94	57.96
Solyc02g067800.2.1	Tomato	plastid	70.45	55.36
PGSC0003DMT400017805	Potato	plastid	69.7	54.76
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	70.45	54.71
KRH07170	Soybean	plastid	73.48	53.89
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.48	53.3
CDY16738	Canola	plastid	68.94	51.7
CDY48125	Canola	plastid	68.94	51.7
CDY68853	Canola	plastid	68.94	50.28
CDY69697	Canola	plastid	68.94	50.28
CDY51008	Canola	mitochondrion	50.0	47.48
CDY72536	Canola	mitochondrion	48.48	46.38
CDY40054	Canola	mitochondrion	53.03	42.94
CDY66794	Canola	mitochondrion	52.27	42.33
CDY50999	Canola	cytosol, mitochondrion, plastid	52.27	42.07
CDX81767	Canola	cytosol, nucleus, plastid	51.52	41.46
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	53.03	40.7
CDY16414	Canola	nucleus, plastid	62.12	40.59
CDY46781	Canola	nucleus, plastid	62.12	40.59
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	52.27	40.12
CDY10714	Canola	mitochondrion	50.76	35.45
Os01t0169400-01	Rice	plastid	65.91	34.66
CDY24027	Canola	mitochondrion	49.24	34.57
CDY23903	Canola	plastid	50.76	33.84
CDY67958	Canola	plastid	50.76	33.84
CDY06285	Canola	nucleus, plastid	48.48	33.68
TraesCS3D01G093500.1	Wheat	plastid	64.39	33.07
TraesCS3B01G108500.1	Wheat	plastid	64.39	33.07
TraesCS3A01G093200.1	Wheat	plastid	64.39	33.07
CDY22713	Canola	plastid	47.73	32.98
Zm00001d039694_P001	Maize	plastid	64.39	32.57
EES00235	Sorghum	plastid	64.39	31.72
CDY06988	Canola	plastid	47.73	31.34
HORVU3Hr1G016690.1	Barley	plastid	64.39	30.69
CDX93178	Canola	cytosol, nucleus, plastid	52.27	30.4
CDY31207	Canola	plastid	49.24	30.09
CDY04570	Canola	plastid	48.48	29.36
CDY62454	Canola	plastid	47.73	29.03
CDX77182	Canola	plastid	47.73	29.03
CDY15755	Canola	plastid	47.73	29.03
CDY07604	Canola	mitochondrion	50.0	28.45
CDY24903	Canola	mitochondrion	49.24	28.14
CDX93609	Canola	nucleus	47.73	28.0
CDX83290	Canola	plastid	48.48	27.71
CDX95115	Canola	plastid	47.73	27.63
CDY10726	Canola	mitochondrion	48.48	27.12
CDY02059	Canola	mitochondrion	48.48	27.12
CDY49845	Canola	nucleus, plastid	59.09	25.0
CDY52150	Canola	nucleus, plastid	58.33	24.37
CDY12784	Canola	nucleus, plastid	58.33	22.92
CDY01457	Canola	nucleus, plastid	58.33	22.78
CDX89590	Canola	mitochondrion, nucleus	52.27	22.4
CDX68120	Canola	mitochondrion, nucleus	52.27	22.4
CDY18621	Canola	nucleus, plastid	48.48	21.12
CDX81360	Canola	plastid	50.76	20.0

Protein Annotations

EnsemblPlants:CDY49773	EnsemblPlantsGene:GSBRNA2T00093777001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY49773	ProteinID:CDY49773.1	SEG:seg
UniParc:UPI0004EEDA78	UniProt:A0A078IL15	MapMan:15.5.24	:	:	:

Description

BnaA02g28980DBnaA02g28980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL15]

Coordinates

chrLK032857:-:100708..102433

Molecular Weight (calculated)

14642.2 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.425

Length

132 amino acids

Sequence
(BLAST)

001: MSSSYSSYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPTK FANVHRIFGA SNVSKILHEV APHQREDTVN SLAYEAEARL NDPVYGCVGA ISVLQRQVLK
101: LQRELEETNA DLMRYASSLG GEMTSNYGGH RG

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.