Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039694_P001 | Maize | plastid | 83.67 | 80.46 |
| TraesCS3D01G093500.1 | Wheat | plastid | 80.08 | 78.21 |
| TraesCS3B01G108500.1 | Wheat | plastid | 79.68 | 77.82 |
| TraesCS3A01G093200.1 | Wheat | plastid | 79.68 | 77.82 |
| EES00235 | Sorghum | plastid | 82.87 | 77.61 |
| HORVU3Hr1G016690.1 | Barley | plastid | 80.08 | 72.56 |
| Bra039072.1-P | Field mustard | plastid | 35.46 | 67.94 |
| CDY20041 | Canola | plastid | 35.06 | 67.18 |
| CDY13730 | Canola | plastid | 35.06 | 66.67 |
| Bra025294.1-P | Field mustard | plastid | 35.06 | 66.67 |
| CDX83724 | Canola | plastid | 34.66 | 65.91 |
| CDY49773 | Canola | plastid | 34.66 | 65.91 |
| KRH76093 | Soybean | cytosol, endoplasmic reticulum, nucleus | 28.29 | 65.74 |
| Bra033019.1-P | Field mustard | plastid | 34.26 | 65.15 |
| CDY03987 | Canola | plastid | 34.26 | 65.15 |
| Solyc02g067800.2.1 | Tomato | plastid | 43.03 | 64.29 |
| PGSC0003DMT400017805 | Potato | plastid | 43.03 | 64.29 |
| KRH56556 | Soybean | nucleus, plastid | 43.43 | 64.12 |
| KRG93235 | Soybean | plastid | 42.23 | 63.1 |
| Solyc02g086480.1.1 | Tomato | plastid | 37.45 | 63.09 |
| PGSC0003DMT400032875 | Potato | plastid | 39.44 | 63.06 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 45.02 | 61.41 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 41.43 | 61.18 |
| KRH54338 | Soybean | plastid | 45.02 | 61.08 |
| KRH63606 | Soybean | plastid | 44.22 | 60.99 |
| KRH07170 | Soybean | plastid | 43.03 | 60.0 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 45.42 | 59.69 |
| CDY16738 | Canola | plastid | 41.83 | 59.66 |
| CDY48125 | Canola | plastid | 41.83 | 59.66 |
| KRG94119 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 42.63 | 58.79 |
| KRH03242 | Soybean | nucleus, plastid | 44.22 | 58.73 |
| Bra038606.1-P | Field mustard | plastid | 42.23 | 58.56 |
| CDY68853 | Canola | plastid | 42.23 | 58.56 |
| CDY69697 | Canola | plastid | 42.23 | 58.56 |
| Bra035860.1-P | Field mustard | plastid | 40.64 | 57.95 |
| PGSC0003DMT400069646 | Potato | plastid | 40.24 | 57.71 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 44.62 | 57.14 |
| KRH57118 | Soybean | plastid | 44.22 | 56.35 |
| AT5G63090.3 | Thale cress | plastid | 41.04 | 55.38 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 35.06 | 55.35 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 40.24 | 49.75 |
| Os12t0106200-01 | Rice | mitochondrion | 30.28 | 48.72 |
| Os11t0106900-01 | Rice | mitochondrion | 30.28 | 48.72 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 29.88 | 36.23 |
| Os05t0417000-00 | Rice | plastid | 39.04 | 35.13 |
| Os01t0889400-02 | Rice | plastid | 36.65 | 34.2 |
| Os03t0287400-01 | Rice | plastid | 28.29 | 29.71 |
| Os05t0165450-00 | Rice | extracellular | 29.08 | 29.44 |
| Os01t0825000-01 | Rice | cytosol | 29.08 | 29.08 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 33.47 | 21.16 |
Protein Annotations
| EMBL:AB200238 | EMBL:AK105527 | EnsemblPlants:Os01t0169400-01 | EnsemblPlantsGene:Os01g0169400 | EntrezGene:4325196 | InterPro:IPR004883 |
| InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF35 | PFAM:PF03195 | PFscan:PS50891 |
| ProteinID:BAB39926.1 | ProteinID:BAB92516.1 | ProteinID:BAF04047.1 | ProteinID:BAS70601.1 | RefSeq:XP_015648000.1 | RefSeq:XP_015648006.1 |
| RefSeq:XP_015648013.1 | SEG:seg | UniParc:UPI00000ABD85 | UniProt:Q9AS62 | MapMan:15.5.24 | : |
Description
RAMOSA 2Similar to LOB domain protein 25. (Os01t0169400-01)
Coordinates
chr1:-:3551051..3553146
Molecular Weight (calculated)
25729.5 Da
IEP (calculated)
7.781
GRAVY (calculated)
0.003
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSTSNS AISSVVASAV ATTTPGAGSP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD
101: PVYGCVGAIS VLQRQVHRLQ KELDTAHAEL LRYACGEVGI PTALPVTAAP RLAAAMPAPG QLAAAVSAGM YGGGRRLGVI DGGGIAPPSP HTAGCYYARN
201: NNAGSIGADV APVLPYASVA NWTVNAISTT TTNSGSESIG MDHKEGGDSS M
101: PVYGCVGAIS VLQRQVHRLQ KELDTAHAEL LRYACGEVGI PTALPVTAAP RLAAAMPAPG QLAAAVSAGM YGGGRRLGVI DGGGIAPPSP HTAGCYYARN
201: NNAGSIGADV APVLPYASVA NWTVNAISTT TTNSGSESIG MDHKEGGDSS M
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.