Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93235 | Soybean | plastid | 73.53 | 74.4 |
| KRH56556 | Soybean | nucleus, plastid | 73.53 | 73.53 |
| PGSC0003DMT400032875 | Potato | plastid | 67.06 | 72.61 |
| Solyc02g086480.1.1 | Tomato | plastid | 62.94 | 71.81 |
| Bra039072.1-P | Field mustard | plastid | 55.29 | 71.76 |
| CDY20041 | Canola | plastid | 54.71 | 70.99 |
| KRH07170 | Soybean | plastid | 74.71 | 70.56 |
| CDY49773 | Canola | plastid | 54.71 | 70.45 |
| KRG94119 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 75.29 | 70.33 |
| Bra025294.1-P | Field mustard | plastid | 54.12 | 69.7 |
| CDY13730 | Canola | plastid | 54.12 | 69.7 |
| CDY03987 | Canola | plastid | 54.12 | 69.7 |
| CDX83724 | Canola | plastid | 54.12 | 69.7 |
| Bra033019.1-P | Field mustard | plastid | 54.12 | 69.7 |
| Solyc02g067800.2.1 | Tomato | plastid | 64.12 | 64.88 |
| PGSC0003DMT400017805 | Potato | plastid | 63.53 | 64.29 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 65.29 | 60.33 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 54.71 | 58.49 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 35.29 | 43.8 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 40.59 | 42.33 |
| Os01t0169400-01 | Rice | plastid | 61.18 | 41.43 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 41.18 | 40.94 |
| TraesCS3D01G093500.1 | Wheat | plastid | 61.76 | 40.86 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 41.76 | 40.57 |
| TraesCS3A01G093200.1 | Wheat | plastid | 61.18 | 40.47 |
| TraesCS3B01G108500.1 | Wheat | plastid | 61.18 | 40.47 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 51.18 | 40.28 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 39.41 | 39.41 |
| Zm00001d039694_P001 | Maize | plastid | 60.0 | 39.08 |
| EES00235 | Sorghum | plastid | 61.18 | 38.81 |
| HORVU3Hr1G016690.1 | Barley | plastid | 60.59 | 37.18 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 35.29 | 37.04 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 35.88 | 36.97 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 37.65 | 36.78 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 36.47 | 35.84 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 38.24 | 32.99 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 39.41 | 32.84 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 46.47 | 32.78 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 38.82 | 32.67 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 47.06 | 32.65 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 41.76 | 31.7 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 40.0 | 29.69 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 48.82 | 28.92 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 47.06 | 27.4 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 45.88 | 26.09 |
Protein Annotations
| EntrezGene:100243933 | wikigene:100243933 | MapMan:15.5.24 | ProteinID:CCB58480 | ProteinID:CCB58480.1 | ncoils:Coil |
| UniProt:F6HUW2 | EMBL:FN596252 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100243933 | wikigene:LOC100243933 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF12 | UniParc:UPI00015C9E90 | ArrayExpress:VIT_14s0066g00680 |
| EnsemblPlantsGene:VIT_14s0066g00680 | EnsemblPlants:VIT_14s0066g00680.t01 | RefSeq:XP_002273053 | RefSeq:XP_002273053.1 | RefSeq:XP_010660868.1 | SEG:seg |
Description
No Description!
Coordinates
chr14:+:27156014..27157701
Molecular Weight (calculated)
18366.6 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.466
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSYSNSP CAACKLLRRK CMPGCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNEILP HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVLRLQ
101: KELDATNADL IRFTCNDMSS SLSGPGSSQF GRRMSHGGGG GGASFNQNSG LPPPYPSPWD NNPSGDSHES
101: KELDATNADL IRFTCNDMSS SLSGPGSSQF GRRMSHGGGG GGASFNQNSG LPPPYPSPWD NNPSGDSHES
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.