Factsheet for PGSC0003DMT400032875

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086480.1.1	Tomato	plastid	75.8	79.87
Bra039072.1-P	Field mustard	plastid	57.96	69.47
CDY20041	Canola	plastid	57.96	69.47
Bra025294.1-P	Field mustard	plastid	57.96	68.94
CDX83724	Canola	plastid	57.96	68.94
CDY13730	Canola	plastid	57.96	68.94
CDY49773	Canola	plastid	57.96	68.94
Bra033019.1-P	Field mustard	plastid	57.32	68.18
CDY03987	Canola	plastid	57.32	68.18
KRG93235	Soybean	plastid	71.97	67.26
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	72.61	67.06
KRH56556	Soybean	nucleus, plastid	71.97	66.47
PGSC0003DMT400017805	Potato	plastid	69.43	64.88
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.25	63.19
KRH07170	Soybean	plastid	71.97	62.78
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	57.32	56.6
PGSC0003DMT400069646	Potato	plastid	61.78	55.43
PGSC0003DMT400046644	Potato	nucleus, plastid	66.88	54.97
PGSC0003DMT400002549	Potato	plastid	53.5	44.44
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	42.04	40.99
Os01t0169400-01	Rice	plastid	63.06	39.44
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	42.04	39.05
TraesCS3D01G093500.1	Wheat	plastid	63.69	38.91
TraesCS3B01G108500.1	Wheat	plastid	63.69	38.91
TraesCS3A01G093200.1	Wheat	plastid	63.69	38.91
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	42.04	38.6
PGSC0003DMT400061511	Potato	mitochondrion	42.04	38.6
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	42.04	38.15
Zm00001d039694_P001	Maize	plastid	63.06	37.93
EES00235	Sorghum	plastid	63.06	36.94
HORVU3Hr1G016690.1	Barley	plastid	63.69	36.1
PGSC0003DMT400052995	Potato	plastid	43.95	34.33
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	36.94	33.53
PGSC0003DMT400019410	Potato	plastid	40.13	31.82
PGSC0003DMT400038248	Potato	nucleus	25.48	31.25
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	43.31	30.63
PGSC0003DMT400065346	Potato	plastid	39.49	29.67
PGSC0003DMT400002013	Potato	nucleus	49.68	27.18
PGSC0003DMT400065297	Potato	plastid	36.94	26.85
PGSC0003DMT400002011	Potato	nucleus	48.41	26.39
PGSC0003DMT400025959	Potato	nucleus	50.96	25.56
PGSC0003DMT400074783	Potato	mitochondrion	42.04	24.09
PGSC0003DMT400041848	Potato	nucleus	1.91	3.8
PGSC0003DMT400008972	Potato	cytosol	0.64	0.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400032875	EnsemblPlantsGene:PGSC0003DMG400012629	EntrezGene:102602640	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400012629	RefSeq:XP_006338596.1
UniParc:UPI000295E14A	UniProt:M1AY89	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012629]

Coordinates

chr2:-:47350714..47351574

Molecular Weight (calculated)

17648.4 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.719

Length

157 amino acids

Sequence
(BLAST)

001: MASSSSYSNP PCAACKFLRR KCLPGCIFAP YFPPEEPQKF SNVHKIFGAS NVSKLLNEIQ AHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVIRL
101: QKELDATNAD LMRYATNQQS NNNFNYGTSH DDHHQTNYGF SPNTTWNNNP EADDDIQ

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.