Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050430.2.1 | Tomato | nucleus | 62.77 | 79.26 |
| Bra000188.1-P | Field mustard | plastid | 46.72 | 64.32 |
| CDY67958 | Canola | plastid | 46.35 | 64.14 |
| CDY23903 | Canola | plastid | 46.35 | 64.14 |
| Bra016992.1-P | Field mustard | plastid | 44.89 | 61.19 |
| CDY06988 | Canola | plastid | 44.89 | 61.19 |
| GSMUA_AchrUn_... | Banana | plastid | 39.78 | 59.24 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 47.08 | 57.59 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 43.8 | 57.42 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 34.67 | 57.23 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 46.35 | 56.95 |
| GSMUA_Achr11P... | Banana | cytosol | 44.53 | 56.22 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 46.35 | 55.95 |
| PGSC0003DMT400052995 | Potato | plastid | 40.51 | 55.22 |
| CDY07604 | Canola | mitochondrion | 46.72 | 55.17 |
| CDY24903 | Canola | mitochondrion | 45.99 | 54.55 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 43.07 | 53.15 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 40.51 | 52.61 |
| Zm00001d009823_P001 | Maize | plastid | 40.51 | 50.68 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 40.88 | 47.66 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 40.88 | 47.26 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 40.51 | 46.84 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 27.37 | 46.58 |
| Os05t0165450-00 | Rice | extracellular | 41.61 | 45.97 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 28.47 | 45.61 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 28.47 | 45.61 |
| Zm00001d043036_P001 | Maize | cytosol | 39.05 | 45.15 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 28.1 | 44.51 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 39.42 | 43.55 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 26.64 | 43.2 |
| Os01t0825000-01 | Rice | cytosol | 39.42 | 43.03 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 39.05 | 42.8 |
| PGSC0003DMT400032875 | Potato | plastid | 24.09 | 42.04 |
| OQU87769 | Sorghum | cytosol | 37.96 | 41.77 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 24.82 | 39.31 |
| PGSC0003DMT400017805 | Potato | plastid | 24.09 | 39.29 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 42.34 | 37.78 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 25.91 | 37.17 |
| TraesCS3B01G378100.1 | Wheat | plastid | 39.05 | 36.64 |
| PGSC0003DMT400069646 | Potato | plastid | 22.99 | 36.0 |
| PGSC0003DMT400002549 | Potato | plastid | 24.45 | 35.45 |
| PGSC0003DMT400019410 | Potato | plastid | 25.18 | 34.85 |
| PGSC0003DMT400038248 | Potato | nucleus | 16.06 | 34.38 |
| PGSC0003DMT400065346 | Potato | plastid | 25.18 | 33.01 |
| HORVU3Hr1G088440.1 | Barley | plastid | 39.05 | 32.42 |
| PGSC0003DMT400065297 | Potato | plastid | 24.45 | 31.02 |
| PGSC0003DMT400025959 | Potato | nucleus | 25.55 | 22.36 |
| PGSC0003DMT400002013 | Potato | nucleus | 23.36 | 22.3 |
| PGSC0003DMT400002011 | Potato | nucleus | 23.36 | 22.22 |
| PGSC0003DMT400041848 | Potato | nucleus | 1.09 | 3.8 |
| PGSC0003DMT400008972 | Potato | cytosol | 1.46 | 2.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074783 | EnsemblPlantsGene:PGSC0003DMG400029080 | EntrezGene:102578598 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400029080 | SEG:seg |
| UniParc:UPI000294AD1F | UniProt:M1CU60 | MapMan:15.5.24 | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029080]
Coordinates
chr6:+:31564146..31570351
Molecular Weight (calculated)
30205.3 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.469
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRYMLVPP GNTSLNTVTP CAACKLLRRR CAQECPFSPY FSPHEPQKFA SVHKVFGASN VSKMLMEVPE SQRADTANSL VYEANVRLRD PVYGCMGAIS
101: SLQQQVQALQ AELNVIRAEI IKYNTTTLIP SSHITSLLSS GAVSIATVPP PLTILPSSTH DATMYTQPST TTTEFSNISN DGSRPILRIN VIARSPIEPT
201: NSFNDNDSVK NENLGDQPNE RFCDQSNDNL GDDSMNGHDH SLGVEDQPVD AEDFKHFEED QGEPELRSTQ PFFL
101: SLQQQVQALQ AELNVIRAEI IKYNTTTLIP SSHITSLLSS GAVSIATVPP PLTILPSSTH DATMYTQPST TTTEFSNISN DGSRPILRIN VIARSPIEPT
201: NSFNDNDSVK NENLGDQPNE RFCDQSNDNL GDDSMNGHDH SLGVEDQPVD AEDFKHFEED QGEPELRSTQ PFFL
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.