Factsheet for AT2G40470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000188.1-P	Field mustard	plastid	83.04	93.47
CDX93178	Canola	cytosol, nucleus, plastid	94.64	93.39
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	91.07	91.48
CDY67958	Canola	plastid	80.8	91.41
CDY23903	Canola	plastid	80.8	91.41
CDY06988	Canola	plastid	81.7	91.04
Bra016992.1-P	Field mustard	plastid	81.7	91.04
CDY07604	Canola	mitochondrion	90.18	87.07
CDY24903	Canola	mitochondrion	89.29	86.58
VIT_13s0067g02380.t01	Wine grape	nucleus	74.11	74.11
KRH53776	Soybean	nucleus	72.77	73.42
KRH64170	Soybean	nucleus	72.32	72.97
Solyc06g050430.2.1	Tomato	nucleus	68.75	70.97
VIT_06s0004g07790.t01	Wine grape	cytosol	64.29	62.88
KRH17149	Soybean	cytosol, mitochondrion, nucleus	61.16	55.02
KRH72805	Soybean	cytosol, mitochondrion, nucleus	61.61	54.55
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	36.16	47.09
PGSC0003DMT400074783	Potato	mitochondrion	57.59	47.08
AT2G30340.2	Thale cress	nucleus	56.25	46.84
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	30.36	42.77
AT1G16530.1	Thale cress	mitochondrion	30.36	41.21
AT2G30130.1	Thale cress	mitochondrion, nucleus	35.27	40.93
AT5G63090.3	Thale cress	plastid	32.14	38.71
AT1G07900.1	Thale cress	plastid	31.25	36.84
AT1G65620.1	Thale cress	plastid	32.59	36.68
AT2G28500.1	Thale cress	plastid	31.25	30.17
AT2G23660.2	Thale cress	mitochondrion, nucleus	32.14	23.15
AT5G66870.1	Thale cress	nucleus	31.25	22.36

Protein Annotations

MapMan:15.5.24	EntrezGene:818641	UniProt:A0A178VSB7	ProteinID:AAB87589.1	EMBL:AB473844	ProteinID:AEC09834.1
EMBL:AF447889	ProteinID:ANM62766.1	ArrayExpress:AT2G40470	EnsemblPlantsGene:AT2G40470	RefSeq:AT2G40470	TAIR:AT2G40470
RefSeq:AT2G40470-TAIR-G	EnsemblPlants:AT2G40470.1	TAIR:AT2G40470.1	EMBL:AY088856	EMBL:BT025288	ncoils:Coil
EMBL:DQ446613	EMBL:DQ653051	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	InterPro:IPR004883	Symbol:LBD15
InterPro:LOB	RefSeq:NP_001324899.1	RefSeq:NP_565933.1	ProteinID:OAP09269.1	PFAM:PF03195	PO:PO:0000230
PO:PO:0007616	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PFscan:PS50891	PANTHER:PTHR31301
PANTHER:PTHR31301:SF2	UniProt:Q8L5T5	UniParc:UPI00000A101A	SEG:seg	:	:

Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]

Coordinates

chr2:-:16902038..16904032

Molecular Weight (calculated)

24661.4 Da

IEP (calculated)

8.809

GRAVY (calculated)

-0.490

Length

224 amino acids

Sequence
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.