Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51008 | Canola | mitochondrion | 69.95 | 97.12 |
| CDY72536 | Canola | mitochondrion | 68.91 | 96.38 |
| Bra021612.1-P | Field mustard | nucleus | 94.3 | 95.79 |
| CDY10714 | Canola | mitochondrion | 93.26 | 95.24 |
| Bra018335.1-P | Field mustard | mitochondrion | 93.26 | 95.24 |
| Bra022780.1-P | Field mustard | mitochondrion, nucleus | 89.12 | 91.49 |
| CDY24027 | Canola | mitochondrion | 88.08 | 90.43 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 69.43 | 82.21 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 68.91 | 76.44 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 68.39 | 76.3 |
| KRH14912 | Soybean | nucleus | 59.59 | 75.16 |
| KRH73255 | Soybean | mitochondrion, nucleus, plastid | 59.59 | 74.68 |
| KRH30173 | Soybean | mitochondrion, nucleus | 66.32 | 74.42 |
| KRG98217 | Soybean | mitochondrion | 66.32 | 74.42 |
| GSMUA_Achr5P29470_001 | Banana | mitochondrion, nucleus | 51.81 | 69.93 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 60.1 | 67.84 |
| KRG97685 | Soybean | mitochondrion, nucleus | 56.99 | 66.67 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 57.51 | 64.91 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 57.51 | 64.91 |
| TraesCS1A01G222300.1 | Wheat | mitochondrion | 61.14 | 62.43 |
| TraesCS1B01G235700.1 | Wheat | mitochondrion | 61.14 | 62.43 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 61.14 | 62.43 |
| Zm00001d038013_P001 | Maize | mitochondrion | 58.03 | 57.44 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 59.59 | 55.56 |
| EES19343 | Sorghum | mitochondrion | 59.59 | 53.0 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 46.11 | 51.74 |
| AT1G16530.1 | Thale cress | mitochondrion | 43.52 | 50.91 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.14 | 50.64 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 35.23 | 42.77 |
| AT1G07900.1 | Thale cress | plastid | 40.93 | 41.58 |
| AT5G63090.3 | Thale cress | plastid | 39.38 | 40.86 |
| AT1G65620.1 | Thale cress | plastid | 37.31 | 36.18 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 40.93 | 35.27 |
| AT2G28500.1 | Thale cress | plastid | 41.45 | 34.48 |
| AT2G30340.2 | Thale cress | nucleus | 39.38 | 28.25 |
| AT5G66870.1 | Thale cress | nucleus | 39.38 | 24.28 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 36.27 | 22.51 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:817565 | UniProt:A0A178VRK1 | ProteinID:AAC16959.1 | EMBL:AB164306 | EMBL:AB473838 |
| ProteinID:AEC08349.1 | Symbol:ASL5 | ArrayExpress:AT2G30130 | EnsemblPlantsGene:AT2G30130 | RefSeq:AT2G30130 | TAIR:AT2G30130 |
| RefSeq:AT2G30130-TAIR-G | EnsemblPlants:AT2G30130.1 | TAIR:AT2G30130.1 | EMBL:AY086960 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009965 | GO:GO:0010016 | InterPro:IPR004883 | InterPro:LOB | RefSeq:NP_565695.1 |
| ProteinID:OAP07775.1 | PFAM:PF03195 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009031 |
| PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF57 | UniProt:Q8LBW3 | UniParc:UPI00000AB064 | SEG:seg |
Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
Coordinates
chr2:+:12868461..12870045
Molecular Weight (calculated)
21530.7 Da
IEP (calculated)
7.070
GRAVY (calculated)
-0.363
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.