Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66794 | Canola | mitochondrion | 80.61 | 81.6 |
| Bra026042.1-P | Field mustard | mitochondrion | 80.61 | 81.6 |
| Bra026716.1-P | Field mustard | mitochondrion | 80.0 | 80.49 |
| CDY40054 | Canola | mitochondrion | 79.39 | 80.37 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 79.39 | 79.88 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 78.79 | 79.27 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 56.36 | 54.39 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 55.76 | 53.8 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 55.15 | 53.53 |
| KRH43747 | Soybean | mitochondrion | 56.36 | 52.54 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 52.73 | 51.79 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 53.33 | 51.16 |
| KRH13706 | Soybean | mitochondrion | 55.15 | 51.12 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 50.91 | 49.7 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 49.7 | 49.4 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 50.3 | 47.7 |
| TraesCS4B01G016200.1 | Wheat | plastid | 49.09 | 46.29 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 50.91 | 46.15 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 49.7 | 46.07 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 51.52 | 45.7 |
| TraesCS4A01G297500.1 | Wheat | plastid | 47.88 | 45.66 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 50.91 | 43.52 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 41.82 | 43.4 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 50.3 | 41.71 |
| EER93717 | Sorghum | plastid | 51.52 | 41.06 |
| Zm00001d033466_P001 | Maize | plastid | 48.48 | 37.91 |
| AT5G63090.3 | Thale cress | plastid | 42.42 | 37.63 |
| AT1G07900.1 | Thale cress | plastid | 41.82 | 36.32 |
| AT1G65620.1 | Thale cress | plastid | 41.82 | 34.67 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 41.21 | 30.36 |
| AT2G28500.1 | Thale cress | plastid | 41.82 | 29.74 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 48.48 | 27.21 |
| AT2G30340.2 | Thale cress | nucleus | 40.0 | 24.54 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 40.0 | 21.22 |
| AT5G66870.1 | Thale cress | nucleus | 40.0 | 21.09 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:838223 | UniProt:A0A178W2T7 | ProteinID:AAD34704.1 | EMBL:AB473842 | ProteinID:AEE29466.1 |
| ArrayExpress:AT1G16530 | EnsemblPlantsGene:AT1G16530 | RefSeq:AT1G16530 | TAIR:AT1G16530 | RefSeq:AT1G16530-TAIR-G | EnsemblPlants:AT1G16530.1 |
| TAIR:AT1G16530.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD3 | InterPro:LOB | RefSeq:NP_173102.1 | ProteinID:OAP12810.1 |
| PFAM:PF03195 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020100 | PO:PO:0020137 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF7 | UniProt:Q9SA51 |
| UniParc:UPI00000A9BB8 | : | : | : | : | : |
Description
LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
Coordinates
chr1:-:5651268..5652883
Molecular Weight (calculated)
18638.3 Da
IEP (calculated)
8.588
GRAVY (calculated)
-0.336
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.