Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 90.24 | 90.24 |
| CDY66794 | Canola | mitochondrion | 83.54 | 84.05 |
| CDY40054 | Canola | mitochondrion | 82.32 | 82.82 |
| AT1G16530.1 | Thale cress | mitochondrion | 79.27 | 78.79 |
| CDY72536 | Canola | mitochondrion | 51.22 | 60.87 |
| CDY51008 | Canola | mitochondrion | 51.22 | 60.43 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 58.54 | 56.14 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 57.93 | 55.56 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 57.32 | 55.29 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.1 | 53.49 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.1 | 53.49 |
| KRH43747 | Soybean | mitochondrion | 56.1 | 51.98 |
| CDY49773 | Canola | plastid | 41.46 | 51.52 |
| CDY13730 | Canola | plastid | 41.46 | 51.52 |
| CDX83724 | Canola | plastid | 41.46 | 51.52 |
| CDY20041 | Canola | plastid | 40.85 | 51.15 |
| CDY03987 | Canola | plastid | 40.85 | 50.76 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 51.22 | 50.6 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 51.83 | 50.6 |
| KRH13706 | Soybean | mitochondrion | 54.88 | 50.56 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 51.83 | 50.3 |
| TraesCS4B01G016200.1 | Wheat | plastid | 50.61 | 47.43 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 51.22 | 47.19 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 50.0 | 47.13 |
| TraesCS4A01G297500.1 | Wheat | plastid | 49.39 | 46.82 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.83 | 46.7 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 52.44 | 46.24 |
| CDY10714 | Canola | mitochondrion | 52.44 | 45.5 |
| CDY24027 | Canola | mitochondrion | 51.83 | 45.21 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 53.05 | 43.72 |
| EER93717 | Sorghum | plastid | 54.27 | 43.0 |
| CDY48125 | Canola | plastid | 45.12 | 42.05 |
| CDY16738 | Canola | plastid | 45.12 | 42.05 |
| CDY69697 | Canola | plastid | 45.73 | 41.44 |
| CDY68853 | Canola | plastid | 45.12 | 40.88 |
| Zm00001d033466_P001 | Maize | plastid | 50.0 | 38.86 |
| CDY06285 | Canola | nucleus, plastid | 42.07 | 36.32 |
| CDY22713 | Canola | plastid | 42.07 | 36.13 |
| CDY23903 | Canola | plastid | 42.68 | 35.35 |
| CDY67958 | Canola | plastid | 42.68 | 35.35 |
| CDY46781 | Canola | nucleus, plastid | 42.68 | 34.65 |
| CDY16414 | Canola | nucleus, plastid | 42.68 | 34.65 |
| CDY06988 | Canola | plastid | 41.46 | 33.83 |
| CDX77182 | Canola | plastid | 43.29 | 32.72 |
| CDY15755 | Canola | plastid | 43.29 | 32.72 |
| CDY04570 | Canola | plastid | 43.29 | 32.57 |
| CDY62454 | Canola | plastid | 42.68 | 32.26 |
| CDY31207 | Canola | plastid | 42.07 | 31.94 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 43.9 | 31.72 |
| CDX93609 | Canola | nucleus | 42.68 | 31.11 |
| CDX95115 | Canola | plastid | 42.68 | 30.7 |
| CDX83290 | Canola | plastid | 42.68 | 30.3 |
| CDY24903 | Canola | mitochondrion | 42.68 | 30.3 |
| CDY07604 | Canola | mitochondrion | 41.46 | 29.31 |
| CDY02059 | Canola | mitochondrion | 40.85 | 28.39 |
| CDY10726 | Canola | mitochondrion | 40.85 | 28.39 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 50.61 | 28.23 |
| CDX89590 | Canola | mitochondrion, nucleus | 43.29 | 23.05 |
| CDX68120 | Canola | mitochondrion, nucleus | 43.29 | 23.05 |
| CDY49845 | Canola | nucleus, plastid | 42.68 | 22.44 |
| CDY52150 | Canola | nucleus, plastid | 42.68 | 22.15 |
| CDY12784 | Canola | nucleus, plastid | 41.46 | 20.24 |
| CDY18621 | Canola | nucleus, plastid | 37.2 | 20.13 |
| CDY01457 | Canola | nucleus, plastid | 41.46 | 20.12 |
| CDX81360 | Canola | plastid | 39.63 | 19.4 |
Protein Annotations
| EnsemblPlants:CDX81767 | EnsemblPlantsGene:GSBRNA2T00136703001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF7 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX81767 | ProteinID:CDX81767.1 | UniParc:UPI0004EF4828 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC08g38340D
Coordinates
chrLK031826:-:695797..697355
Molecular Weight (calculated)
18254.8 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.251
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPKGHRHGE AVSPCAGCKL LRRKCAKNCV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ VLSENHRSDA VNSLVYEANA RVQDPVYGCV GTISSLHRQL
101: ETLQTQLAIA QAELVHMQTL HHVDTRSSPY MASSFTFPAI KDFSSDDNMA FMYDNGAGES LWSC
101: ETLQTQLAIA QAELVHMQTL HHVDTRSSPY MASSFTFPAI KDFSSDDNMA FMYDNGAGES LWSC
001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
Arabidopsis Description
LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.