CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74943
CDX79747
CDX91374
CDY07778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	CDX74943	AT2G37630.1	16243907
AT5G66870.1	CDX79747	AT2G37630.1	16243907
AT5G66870.1	CDX91374	AT2G37630.1	16243907
AT5G66870.1	CDY07778	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18621	Canola	nucleus, plastid	69.85	77.23
CDY20041	Canola	plastid	20.3	51.91
CDY03987	Canola	plastid	20.3	51.52
CDY49773	Canola	plastid	20.0	50.76
CDX83724	Canola	plastid	20.0	50.76
CDY13730	Canola	plastid	20.0	50.76
CDY72536	Canola	mitochondrion	20.6	50.0
VIT_00s1247g00010.t01	Wine grape	nucleus	35.52	49.38
CDY51008	Canola	mitochondrion	20.0	48.2
VIT_07s0197g00030.t01	Wine grape	nucleus	34.33	46.94
CDY48125	Canola	plastid	23.28	44.32
CDY16738	Canola	plastid	23.28	44.32
CDY68853	Canola	plastid	23.88	44.2
CDY69697	Canola	plastid	23.88	44.2
PGSC0003DMT400002013	Potato	nucleus	37.31	43.55
AT5G66870.1	Thale cress	nucleus	40.6	43.45
KRH62409	Soybean	nucleus	27.46	43.4
PGSC0003DMT400002011	Potato	nucleus	37.01	43.06
Solyc02g065150.1.1	Tomato	nucleus	37.31	42.96
CDY49845	Canola	nucleus, plastid	39.4	42.31
VIT_07s0197g00020.t01	Wine grape	nucleus	36.42	41.78
CDY52150	Canola	nucleus, plastid	39.4	41.77
PGSC0003DMT400025959	Potato	nucleus	38.81	41.53
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	21.19	41.28
CDY46781	Canola	nucleus, plastid	24.78	41.09
CDY16414	Canola	nucleus, plastid	24.78	41.09
CDY01457	Canola	nucleus, plastid	41.19	40.83
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	20.9	40.7
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	38.21	40.63
CDY66794	Canola	mitochondrion	19.7	40.49
CDY40054	Canola	mitochondrion	19.7	40.49
CDY12784	Canola	nucleus, plastid	40.6	40.48
KRH57745	Soybean	nucleus	33.13	40.22
KRH53127	Soybean	nucleus	24.48	40.2
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	35.82	40.13
CDX81767	Canola	cytosol, nucleus, plastid	19.4	39.63
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	33.73	39.37
CDY10714	Canola	mitochondrion	22.09	39.15
KRH76950	Soybean	nucleus	35.52	39.14
CDY50999	Canola	cytosol, mitochondrion, plastid	19.1	39.02
CDY24027	Canola	mitochondrion	21.49	38.3
KRH28509	Soybean	nucleus	34.63	37.66
CDX68120	Canola	mitochondrion, nucleus	33.43	36.36
CDX89590	Canola	mitochondrion, nucleus	33.43	36.36
GSMUA_Achr6P04670_001	Banana	mitochondrion	30.45	35.42
EER93817	Sorghum	plastid	31.34	35.35
Zm00001d033335_P001	Maize	plastid	29.55	35.23
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	29.85	35.21
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	29.55	34.86
TraesCS4A01G235100.1	Wheat	nucleus	29.85	34.72
CDY23903	Canola	plastid	20.0	33.84
CDY67958	Canola	plastid	20.0	33.84
CDY06285	Canola	nucleus, plastid	18.81	33.16
Zm00001d013732_P001	Maize	plastid	29.55	33.11
HORVU4Hr1G013630.2	Barley	nucleus	29.55	32.89
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.25	32.56
CDY22713	Canola	plastid	18.51	32.46
CDY06988	Canola	plastid	18.51	30.85
CDX93178	Canola	cytosol, nucleus, plastid	20.3	29.96
CDY07604	Canola	mitochondrion	19.4	28.02
CDY24903	Canola	mitochondrion	19.1	27.71
CDY04570	Canola	plastid	17.61	27.06
CDY15755	Canola	plastid	17.31	26.73
CDX77182	Canola	plastid	17.31	26.73
CDY62454	Canola	plastid	17.31	26.73
CDY31207	Canola	plastid	16.72	25.93
CDX93609	Canola	nucleus	17.31	25.78
CDX95115	Canola	plastid	17.31	25.44
Os03t0612400-00	Rice	cytosol, nucleus	29.55	24.94
CDY02059	Canola	mitochondrion	17.31	24.58
CDY10726	Canola	mitochondrion	17.31	24.58
CDX83290	Canola	plastid	16.72	24.24

Protein Annotations

EnsemblPlants:CDX81360	EnsemblPlantsGene:GSBRNA2T00134916001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301	PANTHER:PTHR31301:SF22
PFAM:PF03195	PFscan:PS50891	ProteinID:CDX81360	ProteinID:CDX81360.1	SEG:seg	UniParc:UPI0004EF44E3
MapMan:15.5.24	:	:	:	:	:

Description

BnaC09g07710D

Coordinates

chrLK031824:-:1195607..1196614

Molecular Weight (calculated)

37326.4 Da

IEP (calculated)

5.653

GRAVY (calculated)

-0.668

Length

335 amino acids

Sequence
(BLAST)

001: MASSNSPCSA CKFLRRKCTR ECVFAPHFPP DQPNKFSCVH KAFGASNVAK LLSELPLNQR EDAVTSLVYE AETRIQDPVY GCVGLISLQQ QRLKQIQRDT
101: DVARRELATY IGPEAMFPIL QPQQPHFMPQ SQTQQPQFVP ETQQTVFMPQ TQETHFTPQT HQSQFIPQTQ KFMPETQQPS SSSSVSAELT QQQHHDPSMM
201: VIPTAQLYHQ QQQQQFFEFQ QPEAVAGEQH SEMLRAYGEG GSSSSHQHHL NQPQAHVLRF NDGFDSVPTG SVTSTGFNQL TPSGTTVTGV SHSLALGGGT
301: YDIEAQLFMP TQSSQQLPLQ TQETQTSSES DEEGS

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.