CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	98.26	98.26
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	98.26	98.26
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	96.51	96.51
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	79.07	80.0
KRH50484	Soybean	cytosol, nucleus, plastid	73.84	79.87
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	77.91	78.82
KRG89441	Soybean	cytosol, nucleus, plastid	73.26	76.83
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	77.91	76.57
Solyc02g069440.2.1	Tomato	nucleus	65.7	70.19
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	65.7	70.19
CDY51008	Canola	mitochondrion	50.0	61.87
CDY72536	Canola	mitochondrion	48.84	60.87
GSMUA_Achr5P02190_001	Banana	mitochondrion	56.98	59.04
CDY66794	Canola	mitochondrion	53.49	56.44
CDX81767	Canola	cytosol, nucleus, plastid	53.49	56.1
CDY40054	Canola	mitochondrion	52.91	55.83
CDY50999	Canola	cytosol, mitochondrion, plastid	52.91	55.49
CDX83724	Canola	plastid	41.28	53.79
CDY13730	Canola	plastid	41.28	53.79
CDY03987	Canola	plastid	41.28	53.79
GSMUA_Achr2P13170_001	Banana	nucleus	54.07	53.45
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.4	53.3
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	57.56	53.23
CDY49773	Canola	plastid	40.12	52.27
TraesCS4B01G016200.1	Wheat	plastid	52.91	52.0
CDY20041	Canola	plastid	39.53	51.91
TraesCS4A01G297500.1	Wheat	plastid	51.74	51.45
HORVU4Hr1G002480.2	Barley	cytosol	52.33	50.56
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	55.81	48.24
EER93717	Sorghum	plastid	56.98	47.34
CDY10714	Canola	mitochondrion	51.16	46.56
CDY24027	Canola	mitochondrion	50.0	45.74
Zm00001d033466_P001	Maize	plastid	55.23	45.02
CDY48125	Canola	plastid	44.77	43.75
CDY16738	Canola	plastid	44.77	43.75
CDY69697	Canola	plastid	45.35	43.09
CDY68853	Canola	plastid	44.77	42.54
CDY23903	Canola	plastid	44.77	38.89
CDY67958	Canola	plastid	44.77	38.89
CDY06988	Canola	plastid	44.19	37.81
CDY06285	Canola	nucleus, plastid	41.28	37.37
CDY22713	Canola	plastid	41.28	37.17
CDY46781	Canola	nucleus, plastid	43.02	36.63
CDY16414	Canola	nucleus, plastid	43.02	36.63
CDY15755	Canola	plastid	43.6	34.56
CDY04570	Canola	plastid	43.6	34.4
CDX93178	Canola	cytosol, nucleus, plastid	45.35	34.36
CDX77182	Canola	plastid	43.02	34.1
CDY24903	Canola	mitochondrion	45.35	33.77
CDY62454	Canola	plastid	42.44	33.64
CDX93609	Canola	nucleus	43.6	33.33
CDY31207	Canola	plastid	41.28	32.87
CDY07604	Canola	mitochondrion	44.19	32.76
CDX83290	Canola	plastid	43.6	32.47
CDX95115	Canola	plastid	43.02	32.46
CDY10726	Canola	mitochondrion	43.6	31.78
CDY02059	Canola	mitochondrion	43.6	31.78
TraesCS4D01G014600.1	Wheat	nucleus	52.33	30.61
CDX89590	Canola	mitochondrion, nucleus	43.6	24.35
CDX68120	Canola	mitochondrion, nucleus	43.6	24.35
CDY49845	Canola	nucleus, plastid	40.12	22.12
CDY52150	Canola	nucleus, plastid	40.12	21.84
CDY18621	Canola	nucleus, plastid	38.37	21.78
CDX81360	Canola	plastid	41.28	21.19
CDY12784	Canola	nucleus, plastid	41.28	21.13
CDY01457	Canola	nucleus, plastid	41.28	21.01

Protein Annotations

EnsemblPlants:CDY50718	EnsemblPlantsGene:GSBRNA2T00097300001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY50718	ProteinID:CDY50718.1	SEG:seg
UniParc:UPI0004EB0A71	UniProt:A0A078INQ1	MapMan:15.5.24	:	:	:

Description

BnaCnng19520DBnaCnng19520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INQ1]

Coordinates

chrLK032933:-:39718..41066

Molecular Weight (calculated)

18709.2 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.378

Length

172 amino acids

Sequence
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPLHQRGDAV SSMVYEANAR VRDPVYGCVG SISSLQQQID
101: VLQGQLALAQ AEVVHLRVRH STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.