Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069440.2.1 | Tomato | nucleus | 96.89 | 96.89 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 70.19 | 71.07 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 70.19 | 68.9 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 71.43 | 66.86 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.81 | 66.28 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.81 | 66.28 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 69.57 | 65.88 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 69.57 | 65.88 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.19 | 65.7 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 68.94 | 64.91 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 69.57 | 64.0 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 57.14 | 54.44 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 55.9 | 54.22 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 61.49 | 53.23 |
| TraesCS4A01G297500.1 | Wheat | plastid | 57.14 | 53.18 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 57.14 | 52.87 |
| TraesCS4B01G016200.1 | Wheat | plastid | 57.14 | 52.57 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 55.9 | 52.02 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 56.52 | 51.12 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 57.76 | 51.1 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 52.8 | 49.71 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.39 | 47.24 |
| EER93717 | Sorghum | plastid | 60.25 | 46.86 |
| Zm00001d033466_P001 | Maize | plastid | 57.76 | 44.08 |
| PGSC0003DMT400032875 | Potato | plastid | 40.99 | 42.04 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 44.72 | 41.62 |
| PGSC0003DMT400017805 | Potato | plastid | 42.24 | 40.48 |
| PGSC0003DMT400065346 | Potato | plastid | 50.31 | 38.76 |
| PGSC0003DMT400019410 | Potato | plastid | 47.2 | 38.38 |
| PGSC0003DMT400069646 | Potato | plastid | 41.61 | 38.29 |
| PGSC0003DMT400038248 | Potato | nucleus | 30.43 | 38.28 |
| PGSC0003DMT400002549 | Potato | plastid | 44.1 | 37.57 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 44.1 | 37.17 |
| PGSC0003DMT400052995 | Potato | plastid | 45.96 | 36.82 |
| PGSC0003DMT400065297 | Potato | plastid | 47.2 | 35.19 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 47.83 | 34.68 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 56.52 | 30.95 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 46.58 | 27.37 |
| PGSC0003DMT400002013 | Potato | nucleus | 43.48 | 24.39 |
| PGSC0003DMT400002011 | Potato | nucleus | 42.24 | 23.61 |
| PGSC0003DMT400025959 | Potato | nucleus | 44.72 | 23.0 |
| PGSC0003DMT400041848 | Potato | nucleus | 1.86 | 3.8 |
| PGSC0003DMT400008972 | Potato | cytosol | 2.48 | 2.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054637 | EnsemblPlantsGene:PGSC0003DMG400021204 | EntrezGene:102585956 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF7 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400021204 | RefSeq:XP_006353054.1 |
| UniParc:UPI000294ED23 | UniProt:M1BWN1 | MapMan:15.5.24 | : | : | : |
Description
LOB domain-containing protein 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400021204]
Coordinates
chr2:+:28587700..28590685
Molecular Weight (calculated)
17882.4 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.442
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MKECGKNSSS PCAACKLLRR RCGHDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML
101: RTQLAMAQAE VVQLKLRQST NITNSPPNSG SPIMGSLPKG YYHMDLDVDQ SNTFNEPMWP Y
101: RTQLAMAQAE VVQLKLRQST NITNSPPNSG SPIMGSLPKG YYHMDLDVDQ SNTFNEPMWP Y
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.