Factsheet for PGSC0003DMT400019410

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10407	Soybean	mitochondrion	62.12	71.51
PGSC0003DMT400065346	Potato	plastid	71.21	67.46
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	80.3	65.7
KRH22937	Soybean	plastid	65.15	65.15
KRH24932	Soybean	nucleus, plastid	65.15	63.86
KRG89044	Soybean	nucleus, plastid	65.66	63.73
VIT_13s0019g03700.t01	Wine grape	plastid	59.09	59.39
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	51.52	58.96
AT1G07900.1	Thale cress	plastid	54.55	56.84
PGSC0003DMT400065297	Potato	plastid	59.6	54.63
CDX77182	Canola	plastid	57.58	52.53
CDY15755	Canola	plastid	57.58	52.53
CDY62454	Canola	plastid	57.58	52.53
CDY31207	Canola	plastid	56.57	51.85
CDY22713	Canola	plastid	50.0	51.83
CDY06285	Canola	nucleus, plastid	49.49	51.58
CDY04570	Canola	plastid	56.57	51.38
Bra035698.1-P	Field mustard	plastid	59.09	51.09
AT2G28500.1	Thale cress	plastid	59.09	50.43
Bra000491.1-P	Field mustard	plastid	58.59	50.22
CDX83290	Canola	plastid	58.59	50.22
Bra018675.1-P	Field mustard	plastid	52.02	50.0
Bra011942.1-P	Field mustard	plastid	58.08	49.36
Bra031599.1-P	Field mustard	nucleus, plastid	51.01	48.79
PGSC0003DMT400038248	Potato	nucleus	31.31	48.44
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	38.38	47.2
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	40.91	46.82
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	39.9	46.2
CDX93609	Canola	nucleus	50.51	44.44
CDX95115	Canola	plastid	50.0	43.42
PGSC0003DMT400061511	Potato	mitochondrion	37.37	43.27
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	36.36	42.6
PGSC0003DMT400032875	Potato	plastid	31.82	40.13
PGSC0003DMT400017805	Potato	plastid	33.33	39.29
PGSC0003DMT400069646	Potato	plastid	29.8	33.71
PGSC0003DMT400052995	Potato	plastid	33.84	33.33
PGSC0003DMT400046644	Potato	nucleus, plastid	31.82	32.98
PGSC0003DMT400002549	Potato	plastid	30.81	32.28
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	33.33	29.73
PGSC0003DMT400074783	Potato	mitochondrion	34.85	25.18
PGSC0003DMT400002013	Potato	nucleus	31.82	21.95
PGSC0003DMT400002011	Potato	nucleus	31.31	21.53
PGSC0003DMT400025959	Potato	nucleus	30.81	19.49
PGSC0003DMT400008972	Potato	cytosol	2.53	3.38
PGSC0003DMT400041848	Potato	nucleus	0.51	1.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400019410	EnsemblPlantsGene:PGSC0003DMG400007503	EntrezGene:102602814	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400007503	RefSeq:XP_006365742.1
SEG:seg	UniParc:UPI00029513F8	UniProt:M1AC13	MapMan:15.5.24	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007503]

Coordinates

chr6:-:55897437..55900185

Molecular Weight (calculated)

21784.0 Da

IEP (calculated)

7.175

GRAVY (calculated)

-0.282

Length

198 amino acids

Sequence
(BLAST)

001: MESSNTTITT TTPSSPCSVL PPTNSPSPPR VVATPCAACK ILRRRCAEKC VLAPYFPPSE PIKFTIAHRV FGASNIIKFL QELPEYQRAD AVSSMVYEAN
101: ARMRDPVYGS AGAICQLLKQ VNELQAQLAK TQAELVNIQC QQANLMAFVY MEMGPSPPTS PQQSLDKFTN STTHATTQNN MSFLDENNNY GTLETLWT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.