Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019410 | Potato | plastid | 65.7 | 80.3 |
| KRH10407 | Soybean | mitochondrion | 46.28 | 65.12 |
| Solyc11g072470.1.1 | Tomato | plastid | 48.35 | 61.9 |
| Solyc06g005090.2.1 | Tomato | plastid | 49.17 | 60.1 |
| KRH22937 | Soybean | plastid | 47.93 | 58.59 |
| KRH24932 | Soybean | nucleus, plastid | 46.69 | 55.94 |
| KRG89044 | Soybean | nucleus, plastid | 46.69 | 55.39 |
| Solyc04g050010.1.1 | Tomato | cytosol | 36.78 | 53.94 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 42.98 | 52.79 |
| AT1G07900.1 | Thale cress | plastid | 39.67 | 50.53 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 42.98 | 48.37 |
| CDY15755 | Canola | plastid | 40.5 | 45.16 |
| CDY22713 | Canola | plastid | 35.54 | 45.03 |
| CDY06285 | Canola | nucleus, plastid | 35.12 | 44.74 |
| CDX77182 | Canola | plastid | 40.08 | 44.7 |
| CDY62454 | Canola | plastid | 40.08 | 44.7 |
| CDY31207 | Canola | plastid | 39.67 | 44.44 |
| CDY04570 | Canola | plastid | 39.67 | 44.04 |
| AT2G28500.1 | Thale cress | plastid | 42.15 | 43.97 |
| Bra000491.1-P | Field mustard | plastid | 41.74 | 43.72 |
| CDX83290 | Canola | plastid | 41.74 | 43.72 |
| Bra018675.1-P | Field mustard | plastid | 37.19 | 43.69 |
| Bra035698.1-P | Field mustard | plastid | 41.32 | 43.67 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 30.58 | 42.53 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 36.36 | 42.51 |
| Bra011942.1-P | Field mustard | plastid | 40.91 | 42.49 |
| Solyc02g069440.2.1 | Tomato | nucleus | 28.1 | 42.24 |
| Solyc01g044520.1.1 | Tomato | nucleus | 29.75 | 42.11 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 29.34 | 41.52 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 27.69 | 39.18 |
| CDX93609 | Canola | nucleus | 35.95 | 38.67 |
| CDX95115 | Canola | plastid | 35.54 | 37.72 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 25.21 | 36.31 |
| Solyc02g067800.2.1 | Tomato | plastid | 24.79 | 35.71 |
| Solyc02g086480.1.1 | Tomato | plastid | 21.07 | 34.23 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 21.9 | 30.46 |
| Solyc06g050430.2.1 | Tomato | nucleus | 25.62 | 28.57 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 22.73 | 28.06 |
| Solyc06g007390.2.1 | Tomato | nucleus | 26.03 | 26.47 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 24.38 | 25.43 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.07 | 25.12 |
| Solyc11g008830.1.1 | Tomato | plastid | 22.31 | 23.48 |
| Solyc02g065150.1.1 | Tomato | nucleus | 22.31 | 18.56 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 22.31 | 17.14 |
Protein Annotations
| EnsemblPlants:Solyc06g075330.1.1 | EnsemblPlantsGene:Solyc06g075330.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR004883 |
| InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF14 | PFAM:PF03195 | PFscan:PS50891 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766B69 | UniProt:K4C9P8 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr6:-:46758509..46762238
Molecular Weight (calculated)
27934.7 Da
IEP (calculated)
8.784
GRAVY (calculated)
-0.250
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSTNEGIRL IGHLATSSRH FDHQFSVIII IIIMFFDHLF LLIFRWSPTK RRSPPQHRRL PALYCRQLTL HLHRGWWPHL VLPVRYYEGD ARRNVLAPYF
101: PPSEPIKFTI AHRVFGASNI IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ LQKQVNELQA QLAKTQAELV NIQCQQANLM AFVYMEMGPS
201: PPTSPQQSLD KFTNSTTHDT IQNNMSFLDE NNSYGTLETL WT
101: PPSEPIKFTI AHRVFGASNI IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ LQKQVNELQA QLAKTQAELV NIQCQQANLM AFVYMEMGPS
201: PPTSPQQSLD KFTNSTTHDT IQNNMSFLDE NNSYGTLETL WT
001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT
Arabidopsis Description
LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.