CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95115	Canola	plastid	94.67	93.42
Bra018675.1-P	Field mustard	plastid	84.0	91.75
CDY22713	Canola	plastid	72.0	84.82
CDY06285	Canola	nucleus, plastid	71.56	84.74
AT1G07900.1	Thale cress	plastid	69.33	82.11
CDY62454	Canola	plastid	64.44	66.82
CDX77182	Canola	plastid	64.0	66.36
CDY31207	Canola	plastid	63.56	66.2
CDY15755	Canola	plastid	63.56	65.9
CDY04570	Canola	plastid	62.67	64.68
KRH10407	Soybean	mitochondrion	48.44	63.37
CDX83290	Canola	plastid	64.89	63.2
Solyc04g050010.1.1	Tomato	cytosol	45.78	62.42
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	45.33	58.96
VIT_13s0019g03700.t01	Wine grape	plastid	51.11	58.38
KRH24932	Soybean	nucleus, plastid	52.0	57.92
KRG89044	Soybean	nucleus, plastid	52.44	57.84
Solyc11g072470.1.1	Tomato	plastid	48.44	57.67
KRH22937	Soybean	plastid	50.67	57.58
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	51.11	56.93
CDY51008	Canola	mitochondrion	34.67	56.12
GSMUA_Achr6P33070_001	Banana	plastid	48.44	55.61
VIT_06s0004g03350.t01	Wine grape	plastid	50.22	55.39
CDY72536	Canola	mitochondrion	33.78	55.07
Solyc06g005090.2.1	Tomato	plastid	48.0	54.55
KRG91848	Soybean	plastid	52.0	52.7
KRH34918	Soybean	plastid	52.0	52.7
Solyc05g048740.2.1	Tomato	nucleus, plastid	49.78	52.09
PGSC0003DMT400065346	Potato	plastid	48.0	51.67
CDY13730	Canola	plastid	29.78	50.76
CDX83724	Canola	plastid	29.78	50.76
PGSC0003DMT400019410	Potato	plastid	44.44	50.51
GSMUA_Achr9P04330_001	Banana	plastid	39.11	49.44
CDY20041	Canola	plastid	28.44	48.85
CDY03987	Canola	plastid	28.44	48.48
TraesCS1A01G062200.1	Wheat	cytosol, plastid	44.0	48.06
CDY49773	Canola	plastid	28.0	47.73
PGSC0003DMT400065297	Potato	plastid	45.78	47.69
HORVU1Hr1G012720.1	Barley	cytosol, plastid	44.0	46.05
TraesCS1B01G080600.1	Wheat	cytosol, plastid	44.0	46.05
TraesCS2D01G008400.1	Wheat	plastid	44.0	46.05
Zm00001d035498_P001	Maize	plastid	44.89	45.7
Zm00001d010978_P001	Maize	plastid	42.67	45.28
EES18939	Sorghum	plastid	43.56	44.75
EER92422	Sorghum	plastid	46.22	44.26
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	33.78	44.19
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	33.33	43.6
CDY66794	Canola	mitochondrion	31.56	43.56
CDY40054	Canola	mitochondrion	31.56	43.56
TraesCS4D01G197400.1	Wheat	plastid	43.11	43.5
TraesCS4B01G197100.1	Wheat	plastid	43.11	43.5
Zm00001d028721_P001	Maize	plastid	45.33	43.4
HORVU4Hr1G056890.2	Barley	plastid	43.11	43.3
Zm00001d047752_P001	Maize	plastid	45.78	43.1
CDX81767	Canola	cytosol, nucleus, plastid	31.11	42.68
TraesCS4A01G107300.1	Wheat	plastid	42.22	42.6
Os03t0287400-01	Rice	plastid	44.44	41.84
CDY10714	Canola	mitochondrion	34.67	41.27
CDY50999	Canola	cytosol, mitochondrion, plastid	29.78	40.85
CDY24027	Canola	mitochondrion	33.78	40.43
CDY48125	Canola	plastid	30.67	39.2
CDY16738	Canola	plastid	30.67	39.2
CDY68853	Canola	plastid	30.67	38.12
CDY69697	Canola	plastid	30.22	37.57
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	38.67	35.95
CDY46781	Canola	nucleus, plastid	29.78	33.17
CDY16414	Canola	nucleus, plastid	29.78	33.17
CDY23903	Canola	plastid	28.44	32.32
CDY67958	Canola	plastid	28.44	32.32
CDY06988	Canola	plastid	28.44	31.84
CDX93178	Canola	cytosol, nucleus, plastid	29.33	29.07
CDY24903	Canola	mitochondrion	29.33	28.57
CDY07604	Canola	mitochondrion	28.89	28.02
CDY10726	Canola	mitochondrion	27.56	26.27
CDY02059	Canola	mitochondrion	27.56	26.27
CDX68120	Canola	mitochondrion, nucleus	32.0	23.38
CDX89590	Canola	mitochondrion, nucleus	32.0	23.38
CDY49845	Canola	nucleus, plastid	29.33	21.15
CDY52150	Canola	nucleus, plastid	28.89	20.57
CDY12784	Canola	nucleus, plastid	29.78	19.94
CDY01457	Canola	nucleus, plastid	29.78	19.82
CDY18621	Canola	nucleus, plastid	25.33	18.81
CDX81360	Canola	plastid	25.78	17.31

Protein Annotations

EnsemblPlants:CDX93609	EnsemblPlantsGene:GSBRNA2T00156289001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDX93609	ProteinID:CDX93609.1	SEG:seg
UniParc:UPI0004EF2E01	MapMan:15.5.24	:	:	:	:

Description

BnaA06g04390D

Coordinates

chrLK031876:-:924456..925623

Molecular Weight (calculated)

25008.2 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.187

Length

225 amino acids

Sequence
(BLAST)

001: MASFMMSGGH LTLSIYTTYL PKSTSPSKHL IMLDMESKCD ASAAIISASP TSSPPPPQLS PRLVLSPCAA CKILRRRCGD KCVLAPYFPP TEPAKFTIAH
101: RVFGASNIIK LLQELPESQR TDAVNSMVYE AGARIRDPIY GCAGAIYNLQ RQVSELQAQL AKAQVEIVSM QLQRSNLLEL IHNMDQPNQE QHNMSFEKSN
201: DFGFIEDNKY SNTIPSTLWC DPLWI

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.