Factsheet for Bra018675.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93609	Canola	nucleus	91.75	84.0
Bra031599.1-P	Field mustard	nucleus, plastid	83.5	83.09
AT1G07900.1	Thale cress	plastid	75.73	82.11
CDX95115	Canola	plastid	89.32	80.7
Bra035698.1-P	Field mustard	plastid	75.24	67.69
Bra000491.1-P	Field mustard	plastid	74.76	66.67
KRH10407	Soybean	mitochondrion	55.34	66.28
Bra011942.1-P	Field mustard	plastid	73.79	65.24
Solyc04g050010.1.1	Tomato	cytosol	50.49	63.03
KRH22937	Soybean	plastid	58.25	60.61
KRH24932	Soybean	nucleus, plastid	59.22	60.4
KRG89044	Soybean	nucleus, plastid	59.71	60.29
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	50.0	59.54
VIT_13s0019g03700.t01	Wine grape	plastid	55.83	58.38
Solyc11g072470.1.1	Tomato	plastid	53.4	58.2
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	56.8	57.92
VIT_06s0004g03350.t01	Wine grape	plastid	56.31	56.86
GSMUA_Achr6P33070_001	Banana	plastid	53.88	56.63
Solyc06g005090.2.1	Tomato	plastid	53.4	55.56
KRG91848	Soybean	plastid	57.77	53.6
KRH34918	Soybean	plastid	57.77	53.6
PGSC0003DMT400065346	Potato	plastid	53.4	52.63
Solyc05g048740.2.1	Tomato	nucleus, plastid	54.37	52.09
PGSC0003DMT400019410	Potato	plastid	50.0	52.02
Bra025294.1-P	Field mustard	plastid	32.52	50.76
GSMUA_Achr9P04330_001	Banana	plastid	43.69	50.56
PGSC0003DMT400065297	Potato	plastid	51.46	49.07
Bra039072.1-P	Field mustard	plastid	31.07	48.85
TraesCS1A01G062200.1	Wheat	cytosol, plastid	48.54	48.54
Bra033019.1-P	Field mustard	plastid	31.07	48.48
HORVU1Hr1G012720.1	Barley	cytosol, plastid	48.54	46.51
TraesCS2D01G008400.1	Wheat	plastid	48.54	46.51
TraesCS1B01G080600.1	Wheat	cytosol, plastid	48.54	46.51
Zm00001d035498_P001	Maize	plastid	49.51	46.15
Zm00001d010978_P001	Maize	plastid	46.6	45.28
EES18939	Sorghum	plastid	48.06	45.21
EER92422	Sorghum	plastid	51.46	45.11
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.38	44.77
Zm00001d047752_P001	Maize	plastid	51.46	44.35
Zm00001d028721_P001	Maize	plastid	50.49	44.26
Bra026042.1-P	Field mustard	mitochondrion	34.47	43.56
TraesCS4D01G197400.1	Wheat	plastid	47.09	43.5
TraesCS4B01G197100.1	Wheat	plastid	47.09	43.5
HORVU4Hr1G056890.2	Barley	plastid	47.09	43.3
TraesCS4A01G107300.1	Wheat	plastid	46.12	42.6
Os03t0287400-01	Rice	plastid	48.54	41.84
Bra021612.1-P	Field mustard	nucleus	38.35	41.58
Bra018335.1-P	Field mustard	mitochondrion	37.86	41.27
Bra026716.1-P	Field mustard	mitochondrion	32.52	40.85
Bra022780.1-P	Field mustard	mitochondrion, nucleus	36.89	40.43
Bra035860.1-P	Field mustard	plastid	32.52	38.07
Bra038606.1-P	Field mustard	plastid	33.01	37.57
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	43.69	37.19
Bra039733.1-P	Field mustard	nucleus, plastid	32.52	33.17
Bra000188.1-P	Field mustard	plastid	31.07	32.16
Bra016992.1-P	Field mustard	plastid	31.07	31.84
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.55	29.15
Bra018320.1-P	Field mustard	mitochondrion	31.07	27.12
Bra032153.1-P	Field mustard	mitochondrion, nucleus	35.44	23.7
Bra012112.1-P	Field mustard	nucleus, plastid	34.47	21.01
Bra037142.1-P	Field mustard	nucleus, plastid	27.67	14.47

Protein Annotations

EnsemblPlants:Bra018675.1	EnsemblPlants:Bra018675.1-P	EnsemblPlantsGene:Bra018675	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000253EDEB
UniProt:M4DQ82	MapMan:15.5.24	:	:	:	:

Description

AT2G28500 (E=2e-075) LBD11 | LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)

Coordinates

chrA06:+:2680223..2681288

Molecular Weight (calculated)

22868.1 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.291

Length

206 amino acids

Sequence
(BLAST)

001: MESKCDASAA IISASPTSSP PPPQLSPRLV LSPCAACKIL RRRCGDKCVL APYFPPTEPA KFTIAHRVFG ASNIIKLLQE LPESQRTDAV NSMVYEAGAR
101: IRDPIYGCAG AIYNLQRQVS ELQAQLAKAQ VEIVSMQLQR SNLLELIHNM DQPNQEQHNM SFDSSFGNCD EFISSPDEES NDFGFIEDNK YSNTIPSTLW
201: CDPLWI

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.