Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000011.1-P
Bra005177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66870.1 Bra000011.1-P AT2G37630.1 16243907
AT5G66870.1 Bra005177.1-P AT2G37630.1 16243907
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01457 Canola nucleus, plastid 98.82 98.82
CDY12784 Canola nucleus, plastid 97.34 97.92
AT5G66870.1 Thale cress nucleus 81.36 87.86
VIT_00s1247g00010.t01 Wine grape nucleus 42.31 59.34
Bra033019.1-P Field mustard plastid 23.08 59.09
KRH62409 Soybean nucleus 36.98 58.96
Bra039072.1-P Field mustard plastid 22.78 58.78
Bra025294.1-P Field mustard plastid 22.78 58.33
VIT_07s0197g00030.t01 Wine grape nucleus 40.24 55.51
KRH53127 Soybean nucleus 33.14 54.9
Solyc02g065150.1.1 Tomato nucleus 46.45 53.95
PGSC0003DMT400002013 Potato nucleus 45.56 53.66
PGSC0003DMT400002011 Potato nucleus 45.27 53.12
VIT_16s0022g02050.t01 Wine grape cytosol, mitochondrion, nucleus 44.67 52.61
VIT_07s0197g00020.t01 Wine grape nucleus 44.67 51.71
VIT_07s0197g00040.t01 Wine grape cytosol, nucleus, plastid 44.08 49.83
KRH76950 Soybean nucleus 44.38 49.34
KRH28509 Soybean nucleus 44.38 48.7
PGSC0003DMT400025959 Potato nucleus 44.38 47.92
Solyc02g090410.2.1 Tomato mitochondrion, plastid 44.38 47.62
Bra035860.1-P Field mustard plastid 24.56 47.16
Bra038606.1-P Field mustard plastid 25.15 46.96
Bra039733.1-P Field mustard nucleus, plastid 27.22 45.54
KRH57745 Soybean nucleus 35.8 43.84
Bra026042.1-P Field mustard mitochondrion 20.41 42.33
GSMUA_Achr6P04670_001 Banana mitochondrion 35.8 42.01
Bra014907.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 21.01 41.28
Bra022780.1-P Field mustard mitochondrion, nucleus 22.78 40.96
Bra026716.1-P Field mustard mitochondrion 19.53 40.24
Bra018335.1-P Field mustard mitochondrion 22.49 40.21
Bra021612.1-P Field mustard nucleus 22.49 40.0
TraesCS4A01G235100.1 Wheat nucleus 33.14 38.89
TraesCS4D01G078800.1 Wheat mitochondrion, nucleus, plastid 32.54 38.73
TraesCS4B01G079900.1 Wheat mitochondrion, nucleus, plastid 32.54 38.73
Bra032153.1-P Field mustard mitochondrion, nucleus 34.91 38.31
Zm00001d033335_P001 Maize plastid 31.36 37.72
EER93817 Sorghum plastid 33.14 37.71
Zm00001d013732_P001 Maize plastid 32.54 36.79
HORVU4Hr1G013630.2 Barley nucleus 32.54 36.54
Bra031599.1-P Field mustard nucleus, plastid 21.89 35.75
Bra018675.1-P Field mustard plastid 21.01 34.47
Bra037142.1-P Field mustard nucleus, plastid 39.94 34.26
Bra000188.1-P Field mustard plastid 20.12 34.17
GSMUA_Achr2P17160_001 Banana mitochondrion 30.18 33.89
Bra016992.1-P Field mustard plastid 20.12 33.83
Bra004572.1-P Field mustard cytosol, mitochondrion, nucleus 20.41 30.94
Bra011942.1-P Field mustard plastid 20.71 30.04
Bra035698.1-P Field mustard plastid 20.12 29.69
Bra000491.1-P Field mustard plastid 19.23 28.14
Bra018320.1-P Field mustard mitochondrion 19.53 27.97
Os03t0612400-00 Rice cytosol, nucleus 31.36 26.7
Protein Annotations
EnsemblPlants:Bra012112.1EnsemblPlants:Bra012112.1-PEnsemblPlantsGene:Bra012112InterPro:IPR004883InterPro:LOBInterPro:LOBD
ncoils:CoilPANTHER:PTHR31301PANTHER:PTHR31301:SF22PFAM:PF03195PFscan:PS50891PIRSF:PIRSF038155
SEG:segUniParc:UPI000254176EUniProt:M4D6K3MapMan:15.5.24::
Description
AT5G66870 (E=1e-112) ASL1, LBD36 | ASL1
Coordinates
chrA07:-:9939966..9940982
Molecular Weight (calculated)
37530.7 Da
IEP (calculated)
7.050
GRAVY (calculated)
-0.673
Length
338 amino acids
Sequence
(BLAST)
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFSYVH KVFGASNVAK LLNEIAANQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRHKQLQQDL
101: ENAKKELAAY VGPQAMLPIL QTQHHPQPHS MSLPPQPQRP SSSSSSASVL TQQQQLHHNL FPMMAIPTGQ LYHQQQQNIF EAQQLAAVNA VAREQQQQQN
201: ELFRAFGAGG GSNTSPNHHH QNQPQVEVLR FDNGFDFVPT GSVTVTGFNQ LSSSGTTVTG MSPSLALGGN FVDSPPTNDS YHTEQQLHHH HQKQQHHEAQ
301: LFIPTQSSQP LPLQTQETQT QSNSESEEGR RSIIDSSR
Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.