Factsheet for PGSC0003DMT400025959

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022771

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	PGSC0003DMT400022771	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	92.33	91.75
PGSC0003DMT400002013	Potato	nucleus	65.18	71.08
PGSC0003DMT400002011	Potato	nucleus	64.22	69.79
VIT_00s1247g00010.t01	Wine grape	nucleus	53.35	69.29
VIT_07s0197g00030.t01	Wine grape	nucleus	50.8	64.9
VIT_07s0197g00020.t01	Wine grape	nucleus	58.47	62.67
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	54.31	59.23
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	56.23	58.86
PGSC0003DMT400008972	Potato	cytosol	26.84	56.76
KRH62409	Soybean	nucleus	35.14	51.89
KRH76950	Soybean	nucleus	49.84	51.32
PGSC0003DMT400032875	Potato	plastid	25.56	50.96
KRH53127	Soybean	nucleus	32.91	50.49
KRH28509	Soybean	nucleus	48.88	49.68
AT5G66870.1	Thale cress	nucleus	48.56	48.56
PGSC0003DMT400002549	Potato	plastid	29.07	48.15
PGSC0003DMT400017805	Potato	plastid	24.92	46.43
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	23.0	44.72
CDY01457	Canola	nucleus, plastid	48.24	44.67
CDY12784	Canola	nucleus, plastid	47.92	44.64
PGSC0003DMT400046644	Potato	nucleus, plastid	27.16	44.5
Bra012112.1-P	Field mustard	nucleus, plastid	47.92	44.38
CDY49845	Canola	nucleus, plastid	44.09	44.23
KRH57745	Soybean	nucleus	38.98	44.2
PGSC0003DMT400069646	Potato	plastid	24.28	43.43
CDY52150	Canola	nucleus, plastid	43.77	43.35
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	23.0	42.6
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	38.34	42.25
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	38.34	42.25
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	23.0	42.11
GSMUA_Achr6P04670_001	Banana	mitochondrion	38.34	41.67
TraesCS4A01G235100.1	Wheat	nucleus	38.02	41.32
Zm00001d033335_P001	Maize	plastid	36.74	40.93
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	22.36	40.46
PGSC0003DMT400061511	Potato	mitochondrion	22.04	40.35
HORVU4Hr1G013630.2	Barley	nucleus	38.34	39.87
EER93817	Sorghum	plastid	37.7	39.73
CDX81360	Canola	plastid	41.53	38.81
Zm00001d013732_P001	Maize	plastid	37.06	38.8
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	21.09	38.15
AT2G23660.2	Thale cress	mitochondrion, nucleus	37.7	37.94
Bra032153.1-P	Field mustard	mitochondrion, nucleus	37.06	37.66
CDX68120	Canola	mitochondrion, nucleus	37.06	37.66
CDX89590	Canola	mitochondrion, nucleus	37.06	37.66
CDY18621	Canola	nucleus, plastid	35.78	36.96
GSMUA_Achr2P17160_001	Banana	mitochondrion	34.5	35.88
PGSC0003DMT400038248	Potato	nucleus	14.06	34.38
PGSC0003DMT400052995	Potato	plastid	20.77	32.34
Bra037142.1-P	Field mustard	nucleus, plastid	39.62	31.47
PGSC0003DMT400065346	Potato	plastid	20.77	31.1
PGSC0003DMT400019410	Potato	plastid	19.49	30.81
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	21.73	30.63
PGSC0003DMT400065297	Potato	plastid	19.81	28.7
Os03t0612400-00	Rice	cytosol, nucleus	35.78	28.21
PGSC0003DMT400074783	Potato	mitochondrion	22.36	25.55
PGSC0003DMT400041848	Potato	nucleus	4.15	16.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400025959	EnsemblPlantsGene:PGSC0003DMG400010023	EntrezGene:102591487	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400010023	RefSeq:XP_006338222.1
SEG:seg	UniParc:UPI0002956227	UniProt:M1AME7	MapMan:15.5.24	:	:

Description

Protein ASYMMETRIC LEAVES2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010023]

Coordinates

chr2:+:44344440..44347310

Molecular Weight (calculated)

34916.3 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.641

Length

313 amino acids

Sequence
(BLAST)

001: MSSTNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPLKFSNVH KVFGASNVAK LLNELNAAQR EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ QKLRQVQDDL
101: LNAKKELSTY IGPSAMIPII NLQPPGFFQP QQHMNAPSSS TMMPFNMNPM SGMSTVVPHG GQLLIRDPQQ QQQLLQQPIQ VQQFITAMAA KEQRDQQEML
201: KFYEQQEQQS SQQEDVVRFN GGFDSTGSVT ATGFHQMSLS VPPSLVLAGT YENPYNLVPP HQQSQPDHSL SYQQQVHLQS QQQLQPPQPP ETPRQQQRAN
301: SEEEGRGSGG PSG

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.