Factsheet for PGSC0003DMT400022771

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002011
PGSC0003DMT400002013
PGSC0003DMT400002549
PGSC0003DMT400025959
PGSC0003DMT400038368
PGSC0003DMT400043197
PGSC0003DMT400064730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT2G37630.1	PGSC0003DMT400043197	AT1G32230.1	19548978
AT2G37630.1	PGSC0003DMT400002549	AT1G65620.1	19228338
AT2G37630.1	PGSC0003DMT400064730	AT3G29390.1	16243907
AT2G37630.1	PGSC0003DMT400002011	AT5G66870.1	16243907
AT2G37630.1	PGSC0003DMT400002013	AT5G66870.1	16243907
AT2G37630.1	PGSC0003DMT400025959	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010840.1.1	Tomato	nucleus	97.78	98.06
VIT_08s0007g00410.t01	Wine grape	nucleus	78.67	79.33
KRG99949	Soybean	nucleus	73.41	74.23
KRH49100	Soybean	nucleus	72.85	72.85
GSMUA_Achr7P10550_001	Banana	nucleus	60.11	70.92
Bra000011.1-P	Field mustard	nucleus	67.31	70.03
CDY07778	Canola	nucleus	67.31	70.03
CDX91374	Canola	nucleus	67.87	68.63
CDX79747	Canola	nucleus	65.93	68.39
GSMUA_Achr9P28330_001	Banana	nucleus	60.94	68.32
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	31.3	68.07
AT2G37630.1	Thale cress	nucleus	68.7	67.57
KRH66092	Soybean	nucleus	66.76	67.51
KRG99521	Soybean	nucleus	65.65	67.33
Bra005177.1-P	Field mustard	nucleus	67.31	67.31
CDX74943	Canola	nucleus	67.59	66.67
TraesCS5A01G079100.1	Wheat	nucleus	59.83	62.97
Os12t0572000-01	Rice	nucleus	57.34	60.53
GSMUA_Achr9P03320_001	Banana	nucleus	46.26	60.51
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	60.39	60.39
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	60.39	60.06
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	60.11	59.94
Zm00001d030737_P001	Maize	nucleus	55.68	54.32
EES17234	Sorghum	nucleus	56.23	53.28
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	32.69	40.0
GSMUA_Achr5P29070_001	Banana	nucleus	60.94	37.41
HORVU6Hr1G071420.2	Barley	plastid	16.62	32.61
PGSC0003DMT400050287	Potato	nucleus	21.05	22.55
PGSC0003DMT400072272	Potato	nucleus	16.34	21.69
PGSC0003DMT400017844	Potato	nucleus	18.28	20.0
PGSC0003DMT400083076	Potato	nucleus	20.5	19.73
PGSC0003DMT400003347	Potato	nucleus	17.17	19.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102603115	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0000793	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009615	GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009719
GO:GO:0009733	GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	GO:GO:0009944	GO:GO:0009965
GO:GO:0009987	GO:GO:0010338	GO:GO:0042742	GO:GO:0042803	GO:GO:0043565	GO:GO:0045088
GO:GO:0045892	GO:GO:0046686	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1AH77
InterPro:Myb_dom	PFAM:PF13921	EnsemblPlantsGene:PGSC0003DMG400008834	PGSC:PGSC0003DMG400008834	EnsemblPlants:PGSC0003DMT400022771	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00029534D2	RefSeq:XP_006341023.1	RefSeq:XP_015161455.1	SEG:seg	:	:

Description

Phantastica [Source:PGSC_GENE;Acc:PGSC0003DMG400008834]

Coordinates

chr9:+:1755891..1760044

Molecular Weight (calculated)

41296.2 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.891

Length

361 amino acids

Sequence
(BLAST)

001: MRERQRWRAE EDALLRAYVR QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG SLTEDEQRLV IQLQAKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE QKENNKVVDP VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHADA STPTPQNLLP PWLSNSTAPS TIRSSSPSVT LSLSPSTVPP
201: TPTPGIPWLQ TDRGPDNASL ILSSFPHHGV APPCGENPFI TELAECCKDL DEGHRTWTAH KKEATWRLRR VELQLESEKA SKVREKMEEI EAKMKALREE
301: QKATLDRIEA EYKDQLAGLR RDAEAKEQKL AEQWTSKHMR LAKFLEQMGC QSRLAEPNGG R

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.