Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G071420.2 | Barley | plastid | 42.03 | 67.39 |
| HORVU7Hr1G077530.1 | Barley | mitochondrion, nucleus | 29.83 | 53.01 |
| TraesCS5A01G079100.1 | Wheat | nucleus | 58.98 | 50.73 |
| HORVU5Hr1G021230.1 | Barley | mitochondrion, nucleus | 61.36 | 50.0 |
| TraesCS5B01G086900.1 | Wheat | mitochondrion, nucleus | 61.02 | 49.59 |
| TraesCS5D01G093100.1 | Wheat | mitochondrion, nucleus | 60.34 | 49.31 |
| Zm00001d030737_P001 | Maize | nucleus | 52.88 | 42.16 |
| EES17234 | Sorghum | nucleus | 53.56 | 41.47 |
| Os12t0572000-01 | Rice | nucleus | 47.12 | 40.64 |
| GSMUA_Achr7P10550_001 | Banana | nucleus | 38.64 | 37.25 |
| VIT_08s0007g00410.t01 | Wine grape | nucleus | 44.07 | 36.31 |
| KRG99949 | Soybean | nucleus | 42.03 | 34.73 |
| KRH49100 | Soybean | nucleus | 42.03 | 34.35 |
| CDX91374 | Canola | nucleus | 41.02 | 33.89 |
| Bra000011.1-P | Field mustard | nucleus | 39.66 | 33.72 |
| CDY07778 | Canola | nucleus | 39.66 | 33.72 |
| GSMUA_Achr9P03320_001 | Banana | nucleus | 31.19 | 33.33 |
| GSMUA_Achr9P28330_001 | Banana | nucleus | 36.27 | 33.23 |
| AT2G37630.1 | Thale cress | nucleus | 41.02 | 32.97 |
| Solyc09g010840.1.1 | Tomato | nucleus | 40.0 | 32.78 |
| Bra005177.1-P | Field mustard | nucleus | 40.0 | 32.69 |
| PGSC0003DMT400022771 | Potato | nucleus | 40.0 | 32.69 |
| CDX79747 | Canola | nucleus | 38.31 | 32.47 |
| CDX74943 | Canola | nucleus | 40.0 | 32.24 |
| KRG99521 | Soybean | nucleus | 38.31 | 32.1 |
| KRH66092 | Soybean | nucleus | 37.63 | 31.09 |
| GSMUA_Achr5P29070_001 | Banana | nucleus | 38.31 | 19.22 |
| HORVU5Hr1G123880.1 | Barley | nucleus | 11.86 | 12.41 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 8.47 | 8.28 |
| HORVU5Hr1G045540.1 | Barley | nucleus | 9.15 | 8.26 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 9.15 | 7.46 |
| HORVU2Hr1G028470.1 | Barley | nucleus, plastid | 5.76 | 6.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | UniProt:A0A287SR80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0010338 | EnsemblPlantsGene:HORVU5Hr1G112000 | EnsemblPlants:HORVU5Hr1G112000.2 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF457 | InterPro:RS2/AS1 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000B469484 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:+:637875120..637876296
Molecular Weight (calculated)
33145.6 Da
IEP (calculated)
11.237
GRAVY (calculated)
-0.774
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: PRLSLPLLLV LSEDYIFDLQ ERLVIRLQAK HDNKWKKIAT EVPGRTAKRL GKWWEVFKKK QQQEIRDSRR PPPEPSPDER GRYEWLLENF AEKLVKERQQ
101: VGAAPLHHHL MAAHMLPHWM SPTATNGAPV SNAPPSPSVT LSLASAVAAP PAGAPWMQQQ QPGMVADARH AALAELSECC RELDEGQRAW AAHRKEASWR
201: LKRVELQLES ERACPPCILP TGSGRRRCCA SCSWGSTTSA TTSSNRARGR RGSRGREGRA GARPRRRRAS GGDWRRAAWR WPARRAGLYK SQCGA
101: VGAAPLHHHL MAAHMLPHWM SPTATNGAPV SNAPPSPSVT LSLASAVAAP PAGAPWMQQQ QPGMVADARH AALAELSECC RELDEGQRAW AAHRKEASWR
201: LKRVELQLES ERACPPCILP TGSGRRRCCA SCSWGSTTSA TTSSNRARGR RGSRGREGRA GARPRRRRAS GGDWRRAAWR WPARRAGLYK SQCGA
001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
Arabidopsis Description
AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.