Factsheet for HORVU4Hr1G023510.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G129100.1	Wheat	nucleus	92.38	92.69
TraesCS4D01G123300.1	Wheat	nucleus	91.39	92.0
TraesCS4A01G189700.1	Wheat	nucleus	91.06	90.16
CDX93535	Canola	nucleus	24.17	87.95
CDX95030	Canola	nucleus	31.46	83.33
Os11t0128500-01	Rice	nucleus	65.23	63.96
Os12t0125000-01	Rice	nucleus	64.57	62.7
KRH37834	Soybean	nucleus	22.52	57.63
Solyc10g081490.1.1	Tomato	nucleus	47.35	52.96
PGSC0003DMT400072272	Potato	nucleus	47.68	52.94
Bra030743.1-P	Field mustard	nucleus	46.03	52.45
CDY31125	Canola	nucleus	46.03	52.45
CDY32135	Canola	nucleus	45.03	50.94
AT1G08810.1	Thale cress	nucleus	46.03	49.64
HORVU5Hr1G045540.1	Barley	nucleus	50.33	46.48
Bra018598.1-P	Field mustard	nucleus	43.05	46.1
HORVU5Hr1G123880.1	Barley	nucleus	41.06	43.97
GSMUA_Achr7P21670_001	Banana	nucleus	42.05	43.94
Zm00001d052397_P001	Maize	nucleus	49.34	43.7
VIT_08s0056g00800.t01	Wine grape	nucleus	45.7	42.99
HORVU5Hr1G045550.1	Barley	nucleus	50.33	41.99
OQU82780	Sorghum	nucleus	50.66	39.95
GSMUA_Achr10P...	Banana	nucleus	38.74	37.14
HORVU2Hr1G028470.1	Barley	nucleus, plastid	30.46	36.51
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	15.56	28.31
CDX95031	Canola	nucleus, plastid	9.27	18.06
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	19.87	16.57
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	8.28	8.47
HORVU6Hr1G071420.2	Barley	plastid	2.65	4.35

Protein Annotations

EMBL:AK356090	EnsemblPlants:HORVU4Hr1G023510.2	EnsemblPlantsGene:HORVU4Hr1G023510	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002004AC0	UniProt:F2CWT7	MapMan:15.5.2.1	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CWT7]

Coordinates

chrchr4H:+:128161360..128163024

Molecular Weight (calculated)

33125.9 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.511

Length

302 amino acids

Sequence
(BLAST)

001: MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY LRPGIKRGNF TSHEEGVIVH LQSLLGNRWA AIASYLPRRT
101: DNDIKNYWNT HLKKKLRKQQ AMGAIFAPPA SSPGTAGDNF DHRHHHDMIS RADGHGAGQA YINMEVSQLI AGRGQSPFAA AAAEACSSSS YASSVDNISK
201: LLGSFMKSSP PPPPHNSYDA DDVKPVLPFD SMSGTGSAEL SFTTSVQQPA LMEAGVGYGY DDENETKPQQ HQAPLSSIEK WLFDEAAELE LSDECYSVPM
301: LF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.