Factsheet for Solyc10g081490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	30.0	97.59
PGSC0003DMT400072272	Potato	nucleus	94.81	94.12
Bra030743.1-P	Field mustard	nucleus	58.52	59.62
CDY31125	Canola	nucleus	58.52	59.62
CDY32135	Canola	nucleus	57.78	58.43
AT1G08810.1	Thale cress	nucleus	58.89	56.79
GSMUA_Achr9P17050_001	Banana	nucleus	57.78	55.91
Bra018598.1-P	Field mustard	nucleus	54.07	51.77
GSMUA_Achr3P09450_001	Banana	nucleus	53.7	50.17
VIT_08s0056g00800.t01	Wine grape	nucleus	59.63	50.16
GSMUA_Achr5P07720_001	Banana	nucleus	54.07	49.49
GSMUA_Achr10P...	Banana	nucleus	52.59	49.31
Os11t0128500-01	Rice	nucleus	54.81	48.05
Os12t0125000-01	Rice	nucleus	55.19	47.91
GSMUA_Achr10P...	Banana	nucleus	50.74	47.9
KRG94936	Soybean	nucleus	61.48	47.7
TraesCS4D01G123300.1	Wheat	nucleus	52.96	47.67
TraesCS4B01G129100.1	Wheat	nucleus	52.96	47.51
HORVU4Hr1G023510.2	Barley	nucleus	52.96	47.35
TraesCS4A01G189700.1	Wheat	nucleus	52.96	46.89
Zm00001d023282_P001	Maize	nucleus	50.0	46.71
KRH64960	Soybean	nucleus	61.85	46.39
TraesCS5A01G142500.1	Wheat	nucleus	54.81	45.82
TraesCS5D01G149600.1	Wheat	nucleus	55.19	45.57
HORVU5Hr1G045540.1	Barley	nucleus	54.81	45.26
Zm00001d052397_P001	Maize	nucleus	56.67	44.87
TraesCS5B01G141200.1	Wheat	nucleus	54.07	44.65
KXG22874	Sorghum	nucleus	52.22	44.2
Solyc02g087960.2.1	Tomato	nucleus	47.78	44.18
Solyc03g116100.2.1	Tomato	nucleus	53.33	43.24
OQU82780	Sorghum	nucleus	58.52	41.25
HORVU5Hr1G045550.1	Barley	nucleus	54.81	40.88
KXG22875	Sorghum	nucleus	47.78	40.44
Solyc02g067340.2.1	Tomato	nucleus	50.0	40.3
Solyc06g069850.2.1	Tomato	nucleus	53.7	38.46
Zm00001d023284_P001	Maize	nucleus	38.15	36.14
Zm00001d023287_P001	Maize	nucleus	39.26	35.45
Solyc09g010840.1.1	Tomato	nucleus	21.48	16.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009414	GO:GO:0009416	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009751	GO:GO:0009753	GO:GO:0009987	GO:GO:0010118	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4D336	EMBL:KP249696	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF726	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g081490.1	EnsemblPlants:Solyc10g081490.1.1	UniParc:UPI00027698E6	SEG:seg	:

Description

R2R3 MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:K4D336]

Coordinates

chr10:+:62542347..62543742

Molecular Weight (calculated)

30866.3 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.774

Length

270 amino acids

Sequence
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKFQ IELDSHNLTL PPPNLDNSNT NNYDHHHHQF TKLLNSPNSS SSSSLYASST ENISRLLEGW MRSSPNPSRR NNIDHDEMLH
201: EAQKELQDQD GGVSNDDVVI IPNVNVDCES SEVVTHEKTS PPPFTYLEKW LLEENGGQVE ELMELPMIFT

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.