CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	22.22	96.39
KRG94936	Soybean	nucleus	90.56	93.68
KRG94429	Soybean	nucleus	15.83	66.28
Solyc10g081490.1.1	Tomato	nucleus	46.39	61.85
PGSC0003DMT400072272	Potato	nucleus	46.39	61.4
KRH37834	Soybean	nucleus	20.0	61.02
GSMUA_Achr3P09450_001	Banana	nucleus	47.78	59.52
Bra030743.1-P	Field mustard	nucleus	42.78	58.11
CDY31125	Canola	nucleus	42.78	58.11
CDY32135	Canola	nucleus	42.5	57.3
VIT_08s0056g00800.t01	Wine grape	nucleus	50.28	56.39
GSMUA_Achr9P17050_001	Banana	nucleus	43.61	56.27
Bra018598.1-P	Field mustard	nucleus	43.33	55.32
AT1G08810.1	Thale cress	nucleus	42.5	54.64
GSMUA_Achr10P...	Banana	nucleus	42.5	53.12
GSMUA_Achr5P07720_001	Banana	nucleus	43.06	52.54
GSMUA_Achr10P...	Banana	nucleus	41.39	52.1
KRH66212	Soybean	cytosol	20.83	49.67
KRH63348	Soybean	nucleus	43.89	49.53
KRH56914	Soybean	nucleus	43.61	49.22
KRH54550	Soybean	nucleus	44.72	48.35
KRH03474	Soybean	nucleus	42.78	47.38
KRH40103	Soybean	nucleus	41.67	45.18
KRH01168	Soybean	nucleus	41.67	44.91
KRH18478	Soybean	nucleus	40.83	44.14
KRG93528	Soybean	nucleus	40.56	43.32
KRH66092	Soybean	nucleus	17.78	17.93
KRG99521	Soybean	nucleus	17.5	17.9
KRG99949	Soybean	nucleus	16.39	16.53
KRH49100	Soybean	nucleus	16.11	16.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100802204	MapMan:15.5.2.1	EMBL:ACUP02001301	EnsemblPlantsGene:GLYMA_03G006600	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1JK53	InterPro:IPR017930	EnsemblPlants:KRH64960	ProteinID:KRH64960
ProteinID:KRH64960.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF726
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002336B42	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:600357..602410

Molecular Weight (calculated)

40691.0 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.948

Length

360 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLSRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKFQ AALDPHSASD STASGQFLPK SFSDRRSTLD ISSNNNNNHG SSIRLSHHQS QSSSTTTYAS STENISRLLE GWMRSSPKQL
201: NKGSIISQYD EDHQLQGIND DDDNNNNNFV STTKLVNLHH LHQHKIRNKD HEQEGGGVDN NMVSHHEEFD SILSFENQNN AAWDKSTCDS MPEKSSEASA
301: AADHHHHHHH DIAAAHERNN VRQKSENSSG APPLSFLEKW LLDENVGHQV EEMMELSPMF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.