CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18478	Soybean	nucleus	89.02	90.09
KRH40103	Soybean	nucleus	70.03	71.08
KRG94429	Soybean	nucleus	18.1	70.93
KRH01168	Soybean	nucleus	69.73	70.36
KRH37834	Soybean	nucleus	23.15	66.1
CDY30719	Canola	nucleus	43.03	54.1
KRH63348	Soybean	nucleus	50.45	53.29
CDY16773	Canola	nucleus	46.29	52.88
KRH56914	Soybean	nucleus	49.85	52.66
Bra035893.1-P	Field mustard	nucleus	51.93	52.24
CDY00289	Canola	nucleus	42.73	51.99
KRH54550	Soybean	nucleus	51.34	51.95
CDX87250	Canola	nucleus	51.63	51.94
CDY69264	Canola	nucleus	51.04	51.81
Bra029258.1-P	Field mustard	nucleus	51.93	51.02
KRH03474	Soybean	nucleus	48.66	50.46
AT3G47600.1	Thale cress	nucleus	49.26	49.85
AT5G62470.2	Thale cress	nucleus	51.34	49.15
KRH66212	Soybean	cytosol	21.96	49.01
KRG94936	Soybean	nucleus	43.62	42.24
KRH64960	Soybean	nucleus	43.32	40.56
Bra010085.1-P	Field mustard	nucleus	50.74	38.17
KRH49100	Soybean	nucleus	20.77	19.39
KRG99949	Soybean	nucleus	20.47	19.33
KRG99521	Soybean	nucleus	19.88	19.03
KRH66092	Soybean	nucleus	19.58	18.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:778078	UniProt:A0A0R0ET30	EMBL:ACUP02011584	EnsemblPlantsGene:GLYMA_19G022100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
EnsemblPlants:KRG93528	ProteinID:KRG93528	ProteinID:KRG93528.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00005B0D6B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:2481222..2483373

Molecular Weight (calculated)

36966.2 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.611

Length

337 amino acids

Sequence
(BLAST)

001: MGRPPCCDKG VKKGPWTPEE DIILVSYIQE HGPGNWKAVP ANTGLSRCSK SCRLRWTNYL RPGIKRGNFT DQEEKMIIHL QALLGNRWAA IAAYLPQRTD
101: NDIKNYWNTY LKKKLNKKLE AGSDQGSLLG GGHNNIGFSS VSQPMSRGQW ERRLQTDIHM AKKALSEALS PNKASSSSST LLAESNSNLS NENSTFYNSN
201: TNKPTTTQSM CYASSADNIA RLLKGWMKNT PKSASCAASA VTQNSCSSSE GITTTKGSTT STSTVELSET FESLFGYESF DNYSSNSEFS PSLSPEATLF
301: QDEGKPDITT GLIDMPFSLL EKWLLDVDAG SQEKLGF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.