CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88909
KRH01276
KRH28509
KRH39574
KRH45025
KRH53127
KRH57745
KRH62409
KRH74370
KRH74373
KRH76950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	KRH39574	AT1G32230.1	19548978
AT2G37630.1	KRH74370	AT1G32230.1	19548978
AT2G37630.1	KRH74373	AT1G32230.1	19548978
AT2G37630.1	KRG88909	AT1G65620.1	19228338
AT2G37630.1	KRH01276	AT3G29390.1	16243907
AT2G37630.1	KRH45025	AT3G29390.1	16243907
AT2G37630.1	KRH28509	AT5G66870.1	16243907
AT2G37630.1	KRH53127	AT5G66870.1	16243907
AT2G37630.1	KRH57745	AT5G66870.1	16243907
AT2G37630.1	KRH62409	AT5G66870.1	16243907
AT2G37630.1	KRH76950	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99521	Soybean	nucleus	89.64	90.91
KRG99949	Soybean	nucleus	77.87	77.87
KRH49100	Soybean	nucleus	77.87	77.01
VIT_08s0007g00410.t01	Wine grape	nucleus	74.79	74.58
GSMUA_Achr7P10550_001	Banana	nucleus	58.82	68.63
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	31.37	67.47
Solyc09g010840.1.1	Tomato	nucleus	67.79	67.22
GSMUA_Achr9P28330_001	Banana	nucleus	60.5	67.08
PGSC0003DMT400022771	Potato	nucleus	67.51	66.76
Bra000011.1-P	Field mustard	nucleus	64.43	66.28
CDY07778	Canola	nucleus	64.43	66.28
CDX79747	Canola	nucleus	63.59	65.23
CDX91374	Canola	nucleus	64.15	64.15
AT2G37630.1	Thale cress	nucleus	65.55	63.76
Bra005177.1-P	Field mustard	nucleus	63.87	63.16
CDX74943	Canola	nucleus	64.15	62.57
TraesCS5A01G079100.1	Wheat	nucleus	57.98	60.35
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	58.54	57.89
GSMUA_Achr9P03320_001	Banana	nucleus	44.54	57.61
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	58.54	57.58
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	58.26	57.46
Os12t0572000-01	Rice	nucleus	53.78	56.14
Zm00001d030737_P001	Maize	nucleus	55.74	53.78
EES17234	Sorghum	nucleus	56.58	53.02
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	31.09	37.63
GSMUA_Achr5P29070_001	Banana	nucleus	60.22	36.56
KRG94429	Soybean	nucleus	8.68	36.05
KRH37834	Soybean	nucleus	10.36	31.36
HORVU6Hr1G071420.2	Barley	plastid	14.57	28.26
KRH66212	Soybean	cytosol	10.08	23.84
KRH63348	Soybean	nucleus	19.05	21.32
KRH54550	Soybean	nucleus	19.33	20.72
KRH56914	Soybean	nucleus	18.49	20.69
KRH03474	Soybean	nucleus	18.77	20.62
KRH40103	Soybean	nucleus	18.77	20.18
KRH18478	Soybean	nucleus	18.77	20.12
KRH01168	Soybean	nucleus	18.77	20.06
KRG93528	Soybean	nucleus	18.49	19.58
KRG94936	Soybean	nucleus	18.21	18.68
KRH64960	Soybean	nucleus	17.93	17.78

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100101908	MapMan:15.5.2.1	EMBL:ACUP02001890	EMBL:AY790253	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G081900	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010338	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH66092	ProteinID:KRH66092	ProteinID:KRH66092.1
InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF658	UniProt:Q4VPE5
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000051D685	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:22433399..22436557

Molecular Weight (calculated)

40891.8 Da

IEP (calculated)

10.042

GRAVY (calculated)

-0.773

Length

357 amino acids

Sequence
(BLAST)

001: MKERQRWRAE EDALLRSYVK QYGPREWNLV SQRMNTYLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IHLQAKYGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE KKEINRIADP INNSKYEHIL ESFAEKLVKE RPSPSFVMAA SDGAFLLTDT PAPASSLRPS WLSNSSSAAA IGPSSLSVKL SLSSSTVATP
201: PFSWLPPERG PDNAPFVLGN VSALHGAIPT LSDSMHMSQM VEHCKELEEG HRALATHKKE AAWRLSRVEL QLESEKANRR REKIEEFEAK IKALQEEEKA
301: ALGRIEAEYR EQLAALRRDA ENKEQKLAEQ WDAKHLRFTR LLEQLGCRAG LLEPNAR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.