Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | KRG99521 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRG99949 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRH49100 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRH66092 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01276 | Soybean | nucleus | 91.29 | 90.03 |
| Bra036212.1-P | Field mustard | cytosol | 15.09 | 62.18 |
| CDY44389 | Canola | nucleus | 40.9 | 58.44 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 58.32 | 56.9 |
| PGSC0003DMT400064730 | Potato | nucleus | 49.61 | 53.89 |
| Solyc02g066940.2.1 | Tomato | nucleus | 49.46 | 53.63 |
| CDY04081 | Canola | nucleus | 45.1 | 53.51 |
| Bra033103.1-P | Field mustard | nucleus | 45.57 | 52.79 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 14.0 | 51.14 |
| AT3G29390.1 | Thale cress | nucleus | 45.72 | 50.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.69 | 48.31 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 41.68 | 44.74 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 42.15 | 44.57 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 42.3 | 44.08 |
| KXG39878 | Sorghum | nucleus | 43.55 | 41.6 |
| Zm00001d028208_P009 | Maize | nucleus | 43.39 | 41.21 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 25.66 | 35.79 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 20.84 | 34.99 |
Protein Annotations
| EntrezGene:100798576 | Gene3D:3.30.1370.10 | MapMan:35.1 | EMBL:ACUP02004984 | EnsemblPlantsGene:GLYMA_08G245100 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR036612 | UniProt:K7L8N1 | InterPro:KH_dom_type_1_sf | EnsemblPlants:KRH45025 | ProteinID:KRH45025 |
| ProteinID:KRH45025.1 | PANTHER:PTHR15744 | SUPFAM:SSF54791 | UniParc:UPI0002948B51 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:21166541..21176415
Molecular Weight (calculated)
68395.6 Da
IEP (calculated)
7.577
GRAVY (calculated)
-0.327
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDSSVRVS SSDKTSAAND ASQTRQRKKR KWDQPAESLM PVGMAVPGAL PLSNAVSLGG VAFPAMAPMI SGALLRNPLA ASSQLPQHTV AAAVAAQKLN
101: QQKIQDELII AREIVINDAE SSVRYKLTKR QTQEEIQRCT GAIVITRGKY RLPNAPHDGG KPLYLHISAG AHIKETAERI LAVDRAAAMI EEMLKQEQNS
201: QSISSASPSA LVNILKMLST CVFLGFDADP SLNIVARIRG PNDQYINHIM NETGATVVLR GRGSGNNECL NGEDGQQPLH LFLSSNNAKS LEDAKLLAEN
301: LLDTICTECG ALRVSSCKVY SAVPPPQQVY TAVPPPQQVY SGPSLLKQIP TAISPPQQVY SAVPPPQQLL TGVQSSGIDL EAGTSLTSSS MSAAGVLTPV
401: PPASLVGVTG VTGSLTLGTP SQSIGHLSSG PQANMIGYTP PPLVSGGTSY IGYGGLYPQA TPLQQVALAL RHSPPVTSTD APTTSASNGE SRPTSSSDLE
501: KEKRPPQRRK FQELPVGSKG TTKLNQGLQP LKPYEQSDGL VVRNILTMPA PKKLVPPSSN GMPPPLLRTM PPPPPPKFSD PFEVKVHNKN KTLLKTKSDA
601: VPDTLVNLME YGEEDDDDID DSSEESLPHD TRATGVQKPF WAL
101: QQKIQDELII AREIVINDAE SSVRYKLTKR QTQEEIQRCT GAIVITRGKY RLPNAPHDGG KPLYLHISAG AHIKETAERI LAVDRAAAMI EEMLKQEQNS
201: QSISSASPSA LVNILKMLST CVFLGFDADP SLNIVARIRG PNDQYINHIM NETGATVVLR GRGSGNNECL NGEDGQQPLH LFLSSNNAKS LEDAKLLAEN
301: LLDTICTECG ALRVSSCKVY SAVPPPQQVY TAVPPPQQVY SGPSLLKQIP TAISPPQQVY SAVPPPQQLL TGVQSSGIDL EAGTSLTSSS MSAAGVLTPV
401: PPASLVGVTG VTGSLTLGTP SQSIGHLSSG PQANMIGYTP PPLVSGGTSY IGYGGLYPQA TPLQQVALAL RHSPPVTSTD APTTSASNGE SRPTSSSDLE
501: KEKRPPQRRK FQELPVGSKG TTKLNQGLQP LKPYEQSDGL VVRNILTMPA PKKLVPPSSN GMPPPLLRTM PPPPPPKFSD PFEVKVHNKN KTLLKTKSDA
601: VPDTLVNLME YGEEDDDDID DSSEESLPHD TRATGVQKPF WAL
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.