CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88909
KRH01276
KRH28509
KRH39574
KRH45025
KRH53127
KRH57745
KRH62409
KRH74370
KRH74373
KRH76950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	KRH39574	AT1G32230.1	19548978
AT2G37630.1	KRH74370	AT1G32230.1	19548978
AT2G37630.1	KRH74373	AT1G32230.1	19548978
AT2G37630.1	KRG88909	AT1G65620.1	19228338
AT2G37630.1	KRH01276	AT3G29390.1	16243907
AT2G37630.1	KRH45025	AT3G29390.1	16243907
AT2G37630.1	KRH28509	AT5G66870.1	16243907
AT2G37630.1	KRH53127	AT5G66870.1	16243907
AT2G37630.1	KRH57745	AT5G66870.1	16243907
AT2G37630.1	KRH62409	AT5G66870.1	16243907
AT2G37630.1	KRH76950	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99949	Soybean	nucleus	96.95	98.04
VIT_08s0007g00410.t01	Wine grape	nucleus	80.06	80.73
KRH66092	Soybean	nucleus	77.01	77.87
KRG99521	Soybean	nucleus	75.35	77.27
Solyc09g010840.1.1	Tomato	nucleus	73.68	73.89
PGSC0003DMT400022771	Potato	nucleus	72.85	72.85
GSMUA_Achr7P10550_001	Banana	nucleus	60.66	71.57
Bra000011.1-P	Field mustard	nucleus	66.2	68.88
CDY07778	Canola	nucleus	66.2	68.88
GSMUA_Achr9P28330_001	Banana	nucleus	61.22	68.63
CDX79747	Canola	nucleus	64.82	67.24
CDX91374	Canola	nucleus	66.48	67.23
AT2G37630.1	Thale cress	nucleus	67.59	66.48
Bra005177.1-P	Field mustard	nucleus	66.2	66.2
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	30.19	65.66
CDX74943	Canola	nucleus	66.48	65.57
TraesCS5A01G079100.1	Wheat	nucleus	61.77	65.01
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	62.33	62.33
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	62.33	61.98
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	62.05	61.88
GSMUA_Achr9P03320_001	Banana	nucleus	45.98	60.14
Os12t0572000-01	Rice	nucleus	56.79	59.94
Zm00001d030737_P001	Maize	nucleus	57.89	56.49
EES17234	Sorghum	nucleus	59.0	55.91
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	34.35	42.03
GSMUA_Achr5P29070_001	Banana	nucleus	62.6	38.44
HORVU6Hr1G071420.2	Barley	plastid	18.01	35.33
KRG94429	Soybean	nucleus	8.03	33.72
KRH37834	Soybean	nucleus	9.7	29.66
KRH66212	Soybean	cytosol	9.42	22.52
KRH63348	Soybean	nucleus	19.11	21.63
KRH01168	Soybean	nucleus	19.67	21.26
KRH40103	Soybean	nucleus	19.39	21.08
KRH54550	Soybean	nucleus	19.39	21.02
KRG93528	Soybean	nucleus	19.39	20.77
KRH18478	Soybean	nucleus	18.84	20.42
KRH56914	Soybean	nucleus	17.73	20.06
KRH03474	Soybean	nucleus	17.45	19.38
KRG94936	Soybean	nucleus	16.07	16.67
KRH64960	Soybean	nucleus	16.07	16.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:732551	UniProt:A0A0K2CTB2	EMBL:ACUP02004331	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G132400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010338
InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH49100	ProteinID:KRH49100	ProteinID:KRH49100.1	ProteinID:KRH49101.1
EMBL:KT031259	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457
InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00018C696B	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:15640161..15643221

Molecular Weight (calculated)

40853.7 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.749

Length

361 amino acids

Sequence
(BLAST)

001: MKDRQRWRAE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV INLQATHGNK WKKIAAQVPG RTAKRLGKWW
101: EVFKEKQQRE TKGNNCTIDP INDSKYEHIL ESFAEKLVKE RPSTSTSTSF VMATSNSSFL HADAPAPAPA LLPSWLSNSN GTAPVRPPSP SVTLSLSPST
201: VAAPPPWMQP PVRGQDNASP LVLGNVAPHG AVLAFGENMV MSELVECCKE LDEVHHALAG HKKEAAWRLS RVELQLESEK AGRRREKMEE IEAKIKALRE
301: EQTAALDRIE AEYREQLAGL RRDAESKEQK LAEQWAAKHL RLTKFLEQVG CRSRLTEPNG R

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.