Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90487
EER93817
KXG38822
KXG39878
OQU78015
OQU88012

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37630.1 EER90487 AT1G32230.1 19548978
AT2G37630.1 KXG38822 AT1G32230.1 19548978
AT2G37630.1 OQU78015 AT1G65620.1 19228338
AT2G37630.1 OQU88012 AT1G65620.1 19228338
AT2G37630.1 KXG39878 AT3G29390.1 16243907
AT2G37630.1 EER93817 AT5G66870.1 16243907
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030737_P001 Maize nucleus 87.4 90.0
HORVU7Hr1G077530.1 Barley mitochondrion, nucleus 35.43 81.33
TraesCS5A01G079100.1 Wheat nucleus 68.5 76.09
TraesCS5D01G093100.1 Wheat mitochondrion, nucleus 70.34 74.24
TraesCS5B01G086900.1 Wheat mitochondrion, nucleus 70.08 73.55
HORVU5Hr1G021230.1 Barley mitochondrion, nucleus 69.82 73.48
Os12t0572000-01 Rice nucleus 62.73 69.88
GSMUA_Achr7P10550_001 Banana nucleus 52.23 65.03
GSMUA_Achr9P28330_001 Banana nucleus 53.54 63.35
VIT_08s0007g00410.t01 Wine grape nucleus 57.74 61.45
GSMUA_Achr9P03320_001 Banana nucleus 43.57 60.14
KRG99949 Soybean nucleus 56.17 59.94
KRH49100 Soybean nucleus 55.91 59.0
Bra000011.1-P Field mustard nucleus 52.23 57.35
CDY07778 Canola nucleus 52.23 57.35
Solyc09g010840.1.1 Tomato nucleus 53.81 56.94
KRH66092 Soybean nucleus 53.02 56.58
KRG99521 Soybean nucleus 51.97 56.25
PGSC0003DMT400022771 Potato nucleus 53.28 56.23
CDX79747 Canola nucleus 50.92 55.75
CDX91374 Canola nucleus 51.97 55.46
AT2G37630.1 Thale cress nucleus 53.02 55.04
Bra005177.1-P Field mustard nucleus 51.18 54.02
HORVU5Hr1G112000.2 Barley extracellular, nucleus 41.47 53.56
CDX74943 Canola nucleus 51.44 53.55
HORVU6Hr1G071420.2 Barley plastid 21.0 43.48
GSMUA_Achr5P29070_001 Banana nucleus 55.64 36.05
OQU93155 Sorghum nucleus 9.45 27.07
EES13898 Sorghum nucleus 17.06 21.38
OQU90312 Sorghum nucleus 17.85 20.73
EES13899 Sorghum nucleus 16.54 20.59
KXG39272 Sorghum nucleus 17.06 20.38
EES09957 Sorghum nucleus 15.49 19.93
KXG35628 Sorghum nucleus 16.8 19.51
KXG22875 Sorghum nucleus 15.75 18.81
KXG22874 Sorghum nucleus 14.7 17.55
OQU82780 Sorghum nucleus 15.49 15.4
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1EntrezGene:8068109UniProt:C5YQ95ncoils:CoilEnsemblPlants:EES17234
ProteinID:EES17234ProteinID:EES17234.1GO:GO:0000793GO:GO:0000981GO:GO:0001135GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0006139GO:GO:0006351
GO:GO:0006357GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008356
GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009615GO:GO:0009628GO:GO:0009651
GO:GO:0009653GO:GO:0009719GO:GO:0009733GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0009944GO:GO:0009965GO:GO:0009987GO:GO:0010338GO:GO:0030154GO:GO:0042742
GO:GO:0042803GO:GO:0043565GO:GO:0044212GO:GO:0045088GO:GO:0045892GO:GO:0046686
GO:GO:0050832InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domPFAM:PF13921PFscan:PS51294
PANTHER:PTHR10641PANTHER:PTHR10641:SF457InterPro:RS2/AS1InterPro:SANT/MybSMART:SM00717EnsemblPlantsGene:SORBI_3008G137500
SUPFAM:SSF46689UniParc:UPI0001A87FCCRefSeq:XP_002443396.1SEG:seg::
Description
hypothetical protein
Coordinates
chr8:-:56637776..56642224
Molecular Weight (calculated)
43240.6 Da
IEP (calculated)
9.997
GRAVY (calculated)
-0.838
Length
381 amino acids
Sequence
(BLAST)
001: MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG SLSEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE LRDSRRPPPE PSPDERGRYE WLLENFAEKL VGERPHQQVA AAAAPPTLLM ASPVLPPWLS PNAGATVGVA QPPRPPSPSV TLSLASATVA
201: PPAPAPWMPE RAAAEAAAAA YGFPSPPQQH GAPGGGVPPP QPPPPHPGMA VVEGQALAEL AECCRELEEG QRAWAAHRRE AAWRLKRVEQ QLEMEREMRR
301: REVWEEFEAK MRTMRLEQAA AAERVERDHR EKVAELRRDA QLKEEKMAEQ WAAKHARVAK FLDQIGCSSR SSWSSATEMN C
Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)
001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
Arabidopsis Description
AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.