CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	23.2	89.16
CDX95030	Canola	nucleus	30.09	84.21
Zm00001d023282_P001	Maize	nucleus	70.85	78.2
KRH37834	Soybean	nucleus	21.0	56.78
KXG22875	Sorghum	nucleus	52.66	52.66
Solyc10g081490.1.1	Tomato	nucleus	44.2	52.22
OQU82780	Sorghum	nucleus	62.38	51.96
PGSC0003DMT400072272	Potato	nucleus	44.2	51.84
Bra030743.1-P	Field mustard	nucleus	42.95	51.7
CDY31125	Canola	nucleus	42.95	51.7
CDY32135	Canola	nucleus	42.95	51.31
OQU93155	Sorghum	nucleus	21.32	51.13
GSMUA_Achr7P21670_001	Banana	nucleus	44.83	49.48
AT1G08810.1	Thale cress	nucleus	43.26	49.29
Bra018598.1-P	Field mustard	nucleus	43.26	48.94
EES09957	Sorghum	nucleus	40.75	43.92
VIT_08s0056g00800.t01	Wine grape	nucleus	43.89	43.61
EES13898	Sorghum	nucleus	40.75	42.76
GSMUA_Achr10P...	Banana	nucleus	39.81	40.32
KXG35628	Sorghum	nucleus	41.38	40.24
OQU90312	Sorghum	nucleus	40.75	39.63
KXG39272	Sorghum	nucleus	39.5	39.5
EES13899	Sorghum	nucleus	36.99	38.56
CDX95031	Canola	nucleus, plastid	10.34	21.29
EES17234	Sorghum	nucleus	17.55	14.7

Protein Annotations

EnsemblPlants:KXG22874	EnsemblPlantsGene:SORBI_3008G020300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	ProteinID:KXG22874	ProteinID:KXG22874.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0003C69073	UniProt:A0A1B6PAU1	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr8:+:1748085..1749044

Molecular Weight (calculated)

34917.5 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.436

Length

319 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GIKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY LRPGIRRGNF TPHEEGIIVH LQSLLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLQKQQ AIGAIFAPPP PPSESPIIPA VVPTATTGSH ADCHHDDMMT LSKDSYGRPA SSTPAPADEV TQFIGLCSPP FAATNGDTFS
201: SPYASSMDNI SKLLNGFMMK SSPTQDDAAT NIKPSSVIDI NPFDHKSGGA LSDDVPLLMP PPQQQQQQAL AGHGGYHKPK LQQLSSIEKW LFDEAAEQVV
301: DHQLMEISDG CCSVPSLLL

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.