Factsheet for PGSC0003DMT400072272

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	29.78	97.59
Solyc10g081490.1.1	Tomato	nucleus	94.12	94.81
Bra030743.1-P	Field mustard	nucleus	59.19	60.75
CDY31125	Canola	nucleus	59.19	60.75
CDY32135	Canola	nucleus	58.09	59.18
AT1G08810.1	Thale cress	nucleus	59.56	57.86
GSMUA_Achr9P17050_001	Banana	nucleus	56.62	55.2
Bra018598.1-P	Field mustard	nucleus	53.68	51.77
GSMUA_Achr3P09450_001	Banana	nucleus	53.68	50.52
VIT_08s0056g00800.t01	Wine grape	nucleus	59.19	50.16
GSMUA_Achr10P...	Banana	nucleus	52.57	49.65
GSMUA_Achr5P07720_001	Banana	nucleus	53.68	49.49
Os11t0128500-01	Rice	nucleus	54.41	48.05
Os12t0125000-01	Rice	nucleus	54.78	47.91
GSMUA_Achr10P...	Banana	nucleus	50.37	47.9
KRG94936	Soybean	nucleus	61.03	47.7
HORVU4Hr1G023510.2	Barley	nucleus	52.94	47.68
TraesCS4D01G123300.1	Wheat	nucleus	52.57	47.67
TraesCS4B01G129100.1	Wheat	nucleus	52.57	47.51
TraesCS4A01G189700.1	Wheat	nucleus	52.57	46.89
Zm00001d023282_P001	Maize	nucleus	49.63	46.71
KRH64960	Soybean	nucleus	61.4	46.39
TraesCS5A01G142500.1	Wheat	nucleus	54.04	45.51
TraesCS5D01G149600.1	Wheat	nucleus	54.41	45.26
HORVU5Hr1G045540.1	Barley	nucleus	53.68	44.65
Zm00001d052397_P001	Maize	nucleus	55.88	44.57
TraesCS5B01G141200.1	Wheat	nucleus	53.31	44.34
KXG22874	Sorghum	nucleus	51.84	44.2
PGSC0003DMT400050287	Potato	nucleus	52.94	42.73
PGSC0003DMT400017844	Potato	nucleus	49.63	40.91
PGSC0003DMT400003347	Potato	nucleus	47.79	40.88
OQU82780	Sorghum	nucleus	57.35	40.73
KXG22875	Sorghum	nucleus	47.43	40.44
HORVU5Hr1G045550.1	Barley	nucleus	53.68	40.33
PGSC0003DMT400083076	Potato	nucleus	53.31	38.67
Zm00001d023284_P001	Maize	nucleus	37.87	36.14
Zm00001d023287_P001	Maize	nucleus	38.97	35.45
PGSC0003DMT400022771	Potato	nucleus	21.69	16.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102591950	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009416
GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987
GO:GO:0010118	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CQ00	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400028125	PGSC:PGSC0003DMG400028125	EnsemblPlants:PGSC0003DMT400072272	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF726
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295171D	RefSeq:XP_006339334.1	SEG:seg

Description

MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028125]

Coordinates

chr10:-:56484441..56486409

Molecular Weight (calculated)

31021.3 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.850

Length

272 amino acids

Sequence
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKFQ TELDSHNNLP LPPPNFDNSS TNNYDHHQFS KLLNSPNSSS SSSLYASSTE NISRLLEGWM RSSPNPSRRN NIDHDEMLHE
201: AQKNQDQDGG VSNDDVVTIP NEKSSYNINC ESSEVVTHEK ASPPPFTYLE KWLLEENGGQ VEELMELPMI FT

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.