CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	20.69	79.52
CDX95030	Canola	nucleus	27.59	77.19
Zm00001d023284_P001	Maize	nucleus	55.17	61.75
Zm00001d023287_P001	Maize	nucleus	56.11	59.87
KXG22874	Sorghum	nucleus	52.66	52.66
OQU93155	Sorghum	nucleus	21.94	52.63
KRH37834	Soybean	nucleus	19.44	52.54
Solyc10g081490.1.1	Tomato	nucleus	40.44	47.78
PGSC0003DMT400072272	Potato	nucleus	40.44	47.43
Bra030743.1-P	Field mustard	nucleus	39.19	47.17
CDY31125	Canola	nucleus	39.19	47.17
CDY32135	Canola	nucleus	38.56	46.07
GSMUA_Achr7P21670_001	Banana	nucleus	40.13	44.29
AT1G08810.1	Thale cress	nucleus	38.56	43.93
Bra018598.1-P	Field mustard	nucleus	38.56	43.62
OQU82780	Sorghum	nucleus	51.72	43.08
EES09957	Sorghum	nucleus	37.62	40.54
VIT_08s0056g00800.t01	Wine grape	nucleus	40.44	40.19
KXG39272	Sorghum	nucleus	39.81	39.81
EES13898	Sorghum	nucleus	37.93	39.8
OQU90312	Sorghum	nucleus	40.75	39.63
KXG35628	Sorghum	nucleus	39.81	38.72
GSMUA_Achr10P...	Banana	nucleus	36.36	36.83
EES13899	Sorghum	nucleus	35.11	36.6
CDX95031	Canola	nucleus, plastid	9.09	18.71
EES17234	Sorghum	nucleus	18.81	15.75

Protein Annotations

EnsemblPlants:KXG22875	EnsemblPlantsGene:SORBI_3008G020600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	ProteinID:KXG22875	ProteinID:KXG22875.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0003C70848	UniProt:A0A1B6PBP7	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr8:+:1775893..1776852

Molecular Weight (calculated)

35456.5 Da

IEP (calculated)

7.588

GRAVY (calculated)

-0.676

Length

319 amino acids

Sequence
(BLAST)

001: MGRPPWCECD KAGIKKGPWT PEEDLTLVSY IHEHGAGRWR LVPASTGLLR CSKSCRLRWT NYLRPGIRRG NFSPREERVI VHLQSLLGNR WAAIASHLPQ
101: RTDNDIKNYW NTHLKKKLQE EKEKQQAAIF AAAGHVDDDR RHRRHDVTAS SPLSKDDGSY GYARPAACSS STAADEVTQL LIARRHSSSS SSSYPSSMDN
201: ISKLLKGFLK SSPPPAQDDD AADSKLKPSA IDDDVVVHPF VTFDHMSGTT GSALPPISDV ASTAPPQQVL TTGHGCFHDE AQQQQQQLSS IENWLFDEPN
301: KQQRMENSDG CCSLLPMLF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.