CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047182_P001	Maize	nucleus	81.5	81.76
GSMUA_Achr8P16920_001	Banana	nucleus	27.27	76.99
OQU93155	Sorghum	nucleus	28.21	67.67
GSMUA_Achr6P10700_001	Banana	nucleus	41.07	51.17
GSMUA_Achr8P01400_001	Banana	nucleus	42.01	50.95
EES13898	Sorghum	nucleus	48.28	50.66
GSMUA_Achr4P00480_001	Banana	nucleus	42.01	50.57
GSMUA_Achr2P22010_001	Banana	nucleus	39.5	49.8
GSMUA_Achr7P21010_001	Banana	nucleus	41.69	49.44
GSMUA_Achr6P02690_001	Banana	nucleus	36.68	46.8
GSMUA_Achr7P18080_001	Banana	nucleus	38.56	45.56
EES13899	Sorghum	nucleus	43.57	45.42
OQU90312	Sorghum	nucleus	46.4	45.12
KXG35628	Sorghum	nucleus	46.08	44.82
KXG22875	Sorghum	nucleus	39.81	39.81
KXG22874	Sorghum	nucleus	39.5	39.5
EES09957	Sorghum	nucleus	35.74	38.51
OQU82780	Sorghum	nucleus	40.75	33.94
CDY64733	Canola	nucleus	14.11	21.74
EES17234	Sorghum	nucleus	20.38	17.06

Protein Annotations

EnsemblPlants:KXG39272	EnsemblPlantsGene:SORBI_3001G356000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	ProteinID:KXG39272	ProteinID:KXG39272.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0003C651BF	UniProt:A0A1B6QMW6	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr1:-:64546335..64547906

Molecular Weight (calculated)

33663.7 Da

IEP (calculated)

8.150

GRAVY (calculated)

-0.330

Length

319 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PGNTGLLRCS KSCRLRWTNY LRPGIRRGGF SDHEDRLIVH LQALLGNRWA AIASYLPDRT
101: DNDVKNYWNT HLKKKLLLQH QQRQRASTAA ASSLPSPSKG QWELKLQTDI DLARRALRDA LSVDAAAGPP GMAAAGSAPT AAPAQPYAPT ARSVDGMLLD
201: GWAAAPAAGR SCAVVGGTVI PAPAPATPPG ATDSTSGSSS VLTTECSGSI SSASNKRAAP PVAAGHRLLL VHEENSTSAG QGEVPLSAIE SWLLEDAGGE
301: QKLPHESLLL DAALHNFGF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.