CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16920_001	Banana	nucleus	45.86	53.98
KXG39272	Sorghum	nucleus	67.67	28.21
Zm00001d047182_P001	Maize	nucleus	66.92	27.99
GSMUA_Achr4P00480_001	Banana	nucleus	55.64	27.92
GSMUA_Achr2P22010_001	Banana	nucleus	52.63	27.67
GSMUA_Achr8P01400_001	Banana	nucleus	53.38	27.0
GSMUA_Achr6P10700_001	Banana	nucleus	51.88	26.95
GSMUA_Achr6P02690_001	Banana	nucleus	50.38	26.8
GSMUA_Achr7P21010_001	Banana	nucleus	52.63	26.02
GSMUA_Achr7P18080_001	Banana	nucleus	52.63	25.93
EES13898	Sorghum	nucleus	57.89	25.33
KXG35628	Sorghum	nucleus	58.65	23.78
OQU90312	Sorghum	nucleus	58.65	23.78
EES13899	Sorghum	nucleus	53.38	23.2
EES09957	Sorghum	nucleus	48.87	21.96
KXG22875	Sorghum	nucleus	52.63	21.94
KXG22874	Sorghum	nucleus	51.13	21.32
OQU82780	Sorghum	nucleus	51.13	17.75
EES17234	Sorghum	nucleus	27.07	9.45
CDY64733	Canola	nucleus	6.77	4.35

Protein Annotations

EnsemblPlants:OQU93155	EnsemblPlantsGene:SORBI_3001G490350	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	ProteinID:OQU93155	ProteinID:OQU93155.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B8BA7F6	UniProt:A0A1Z5SBM4	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr1:+:76050338..76051213

Molecular Weight (calculated)

14410.4 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.253

Length

133 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE GVKKGPWTPE EDLVGVHLPF PSYLPRPLIC ACMQGCCGAA RAAASGGPGI RRGGFSDQED RLIVVHLQAL LGNRWAAIAS YLPDRTDNGV
101: KNYWNTHVAS LPPKGQRELK LPTDIDLLVS TTM

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.