CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032179_P001	Maize	nucleus	82.24	83.61
GSMUA_Achr8P16920_001	Banana	nucleus	30.26	81.42
EES13899	Sorghum	nucleus	68.75	68.3
Os08t0437300-00	Rice	nucleus	53.62	62.21
GSMUA_Achr7P21010_001	Banana	nucleus	52.3	59.11
GSMUA_Achr6P10700_001	Banana	nucleus	49.67	58.98
OQU93155	Sorghum	nucleus	25.33	57.89
GSMUA_Achr4P00480_001	Banana	nucleus	50.33	57.74
GSMUA_Achr8P01400_001	Banana	nucleus	49.67	57.41
GSMUA_Achr2P22010_001	Banana	nucleus	46.38	55.73
KXG35628	Sorghum	nucleus	58.22	53.96
GSMUA_Achr6P02690_001	Banana	nucleus	43.42	52.8
GSMUA_Achr7P18080_001	Banana	nucleus	45.39	51.11
KXG39272	Sorghum	nucleus	50.66	48.28
OQU90312	Sorghum	nucleus	50.33	46.65
Os07t0484700-01	Rice	nucleus	25.0	45.51
KXG22874	Sorghum	nucleus	42.76	40.75
EES09957	Sorghum	nucleus	38.16	39.19
KXG22875	Sorghum	nucleus	39.8	37.93
OQU82780	Sorghum	nucleus	42.76	33.94
EES17234	Sorghum	nucleus	21.38	17.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8075673	UniProt:C5YL99	EnsemblPlants:EES13898	ProteinID:EES13898
ProteinID:EES13898.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF682	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3007G138800	SUPFAM:SSF46689	UniParc:UPI0001A878F3	RefSeq:XP_002444403.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:56633667..56635127

Molecular Weight (calculated)

32240.8 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.585

Length

304 amino acids

Sequence
(BLAST)

001: MGRPPCCEKG GVKKGPWTPE EDLVLVSYVQ DHGPGNWRAV PTSTGLMRCS KSCRLRWTNY LRPGIKRGNF SDQEEKLIIH LQALLGNRWA AIASYMPERT
101: DNDIKNYWNT HLKKKFTKTG GGGGAEAKSG RCAAPKGQWE RRLQTDIHTA RQALREALSL DPDPVPPSAK PEQVPQQPPA PAATQAAGQA TYASSAENIA
201: RLLEGWMHPG GGSGAAGKVS SGSRSSASSV SAFSGDEGAS ASNSGTAVRM PERPTRTSKA VDDAGTAGPG PSFSMLESWL LDDGVGHGDT GLVSVPLGDP
301: CEFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.