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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022227_P002 Maize nucleus 89.33 88.79
Os07t0629000-01 Rice nucleus 39.94 86.18
GSMUA_Achr8P16920_001 Banana nucleus 28.35 82.3
TraesCS2D01G163700.1 Wheat nucleus 71.34 74.76
TraesCS2B01G183100.1 Wheat nucleus 70.12 73.48
TraesCS2A01G157600.1 Wheat nucleus 69.51 72.61
OQU93155 Sorghum nucleus 23.78 58.65
GSMUA_Achr6P10700_001 Banana nucleus 41.77 53.52
GSMUA_Achr2P22010_001 Banana nucleus 40.55 52.57
GSMUA_Achr8P01400_001 Banana nucleus 42.07 52.47
GSMUA_Achr7P21010_001 Banana nucleus 42.99 52.42
GSMUA_Achr7P18080_001 Banana nucleus 42.99 52.22
GSMUA_Achr4P00480_001 Banana nucleus 41.46 51.32
GSMUA_Achr6P02690_001 Banana nucleus 38.41 50.4
EES13898 Sorghum nucleus 46.65 50.33
KXG35628 Sorghum nucleus 50.0 50.0
KXG39272 Sorghum nucleus 45.12 46.4
EES13899 Sorghum nucleus 41.46 44.44
EES09957 Sorghum nucleus 36.89 40.88
KXG22874 Sorghum nucleus 39.63 40.75
KXG22875 Sorghum nucleus 39.63 40.75
HORVU2Hr1G028470.1 Barley nucleus, plastid 30.79 40.08
OQU82780 Sorghum nucleus 41.46 35.51
CDY64733 Canola nucleus 11.59 18.36
EES17234 Sorghum nucleus 20.73 17.85
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1EntrezGene:8063514UniProt:A0A1W0W7F6GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domEnsemblPlants:OQU90312
ProteinID:OQU90312ProteinID:OQU90312.1PFAM:PF00249PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF715
InterPro:SANT/MybSMART:SM00717EnsemblPlantsGene:SORBI_3002G385450SUPFAM:SSF46689UniParc:UPI0001A83F9ARefSeq:XP_002463232.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr2:-:74016145..74017731
Molecular Weight (calculated)
34734.7 Da
IEP (calculated)
7.913
GRAVY (calculated)
-0.502
Length
328 amino acids
Sequence
(BLAST)
001: MVRPPCCDKE GVKKGPWTPE EDLVLVSYIQ EHGPGNWRAV PAKTGLMRCS KSCRLRWTNY LRPGIKRGNF TEQEEKLIIH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKRKLQSGG GDGAAKPPAH RPPSSSKGQW ERRLQTDINL ARRALREALT PLDDLKPPQL QRDATAVDAP GAGLGVGGGD SPASSSSGAS
201: QCSPSSAPAA AATAAGPYVL TTENISRMLD GWAGRKAARG GSPGTPGGAE SASTGSSDAS EVSYGGGAAV TLAAAGGPVF EFETKPTVPP AQQMPLSAIE
301: SWLFDDDSHF HHVQSAGVLD AAPMDYPF
Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)
001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
Arabidopsis Description
MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.