Factsheet for HORVU2Hr1G028470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16920_001	Banana	nucleus	35.71	79.65
Os07t0629000-01	Rice	nucleus	40.87	67.76
GSMUA_Achr8P01400_001	Banana	nucleus	40.08	38.4
GSMUA_Achr2P22010_001	Banana	nucleus	38.49	38.34
GSMUA_Achr6P10700_001	Banana	nucleus	38.89	38.28
GSMUA_Achr6P02690_001	Banana	nucleus	37.7	38.0
GSMUA_Achr7P21010_001	Banana	nucleus	40.08	37.55
GSMUA_Achr4P00480_001	Banana	nucleus	39.29	37.36
GSMUA_Achr7P18080_001	Banana	nucleus	38.1	35.56
TraesCS2A01G157600.1	Wheat	nucleus	42.06	33.76
TraesCS2D01G163700.1	Wheat	nucleus	41.67	33.55
TraesCS2B01G183100.1	Wheat	nucleus	41.67	33.55
HORVU5Hr1G123880.1	Barley	nucleus	35.71	31.91
Zm00001d022227_P002	Maize	nucleus	41.27	31.52
OQU90312	Sorghum	nucleus	40.08	30.79
HORVU4Hr1G023510.2	Barley	nucleus	36.51	30.46
HORVU5Hr1G045540.1	Barley	nucleus	36.51	28.13
HORVU5Hr1G045550.1	Barley	nucleus	38.89	27.07
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	17.46	26.51
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	19.05	13.26
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	6.75	5.76
CDY64733	Canola	nucleus	1.19	1.45
HORVU6Hr1G071420.2	Barley	plastid	0.4	0.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A287HI78	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G028470	EnsemblPlants:HORVU2Hr1G028470.1	InterPro:Homeobox-like_sf	InterPro:IPR017877
InterPro:IPR017930	InterPro:Myb-like_dom	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B477CB1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:96732310..96733373

Molecular Weight (calculated)

23759.7 Da

IEP (calculated)

8.655

GRAVY (calculated)

-0.259

Length

252 amino acids

Sequence
(BLAST)

001: MHLHPYSCSG PCTEPPCPHL PPSLNPQHTA HTPHYHGLRL HLSLLLSPHS LCSVAVARVT RSCSYTAPVA RPLVPVRPAP AAKGDLSPIP LGVAEAVASG
101: RVESMGRPPC CDKEGVKKGP WTPEEDLVLV SYVQEHGPGN WRAVPTRTGL MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK LIVHLQALLG NRWAAIASYL
201: PERTDNDXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XGHGGVMSDV VL

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.