Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G142500.1 | Wheat | nucleus | 92.97 | 94.12 |
| TraesCS5D01G149600.1 | Wheat | nucleus | 93.88 | 93.88 |
| TraesCS5B01G141200.1 | Wheat | nucleus | 93.88 | 93.88 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 100.0 | 90.33 |
| CDX93535 | Canola | nucleus | 21.71 | 85.54 |
| CDX95030 | Canola | nucleus | 28.44 | 81.58 |
| KRH37834 | Soybean | nucleus | 20.8 | 57.63 |
| Zm00001d052397_P001 | Maize | nucleus | 57.49 | 55.13 |
| Solyc10g081490.1.1 | Tomato | nucleus | 45.26 | 54.81 |
| PGSC0003DMT400072272 | Potato | nucleus | 44.65 | 53.68 |
| Bra030743.1-P | Field mustard | nucleus | 42.2 | 52.08 |
| CDY31125 | Canola | nucleus | 42.2 | 52.08 |
| CDY32135 | Canola | nucleus | 41.9 | 51.31 |
| Os11t0128500-01 | Rice | nucleus | 48.32 | 51.3 |
| OQU82780 | Sorghum | nucleus | 59.63 | 50.91 |
| Os12t0125000-01 | Rice | nucleus | 48.32 | 50.8 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 46.48 | 50.33 |
| AT1G08810.1 | Thale cress | nucleus | 41.9 | 48.93 |
| GSMUA_Achr7P21670_001 | Banana | nucleus | 42.81 | 48.44 |
| Bra018598.1-P | Field mustard | nucleus | 41.28 | 47.87 |
| HORVU5Hr1G123880.1 | Barley | nucleus | 40.37 | 46.81 |
| VIT_08s0056g00800.t01 | Wine grape | nucleus | 42.51 | 43.3 |
| GSMUA_Achr10P... | Banana | nucleus | 37.92 | 39.37 |
| HORVU2Hr1G028470.1 | Barley | nucleus, plastid | 28.13 | 36.51 |
| HORVU7Hr1G077530.1 | Barley | mitochondrion, nucleus | 14.37 | 28.31 |
| CDX95031 | Canola | nucleus, plastid | 10.09 | 21.29 |
| HORVU5Hr1G021230.1 | Barley | mitochondrion, nucleus | 18.96 | 17.13 |
| HORVU5Hr1G112000.2 | Barley | extracellular, nucleus | 8.26 | 9.15 |
| HORVU6Hr1G071420.2 | Barley | plastid | 2.75 | 4.89 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G045540.1 | EnsemblPlantsGene:HORVU5Hr1G045540 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF909 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00029695E8 | UniProt:M0YEN4 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:352065049..352066140
Molecular Weight (calculated)
36044.8 Da
IEP (calculated)
6.827
GRAVY (calculated)
-0.399
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PINTGLMRCS KSCRLRWTNY LRPGIRRGNF TTHEEGIIVH LQSLLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKQQ ALGAIFAPPP PPSSSAETAA NLPAAVHLDH HHHRYHHDAI AASSSTVDHG CYAACSNPEV TQQHTTITMR RSPFADVATD
201: CSSSSYASSM DNISRLLDGF MKSSPPTATD VKPNIAVFSD PFMSFDRMTG AGAGLAFVPG VQQQQQQMPV LMGGMIYDDE ATGQQQQLQH QLPLCSIEKW
301: LLDEAAEQVA DLMELSDGDC SSLPLLY
101: DNDIKNYWNT HLKKKLKKQQ ALGAIFAPPP PPSSSAETAA NLPAAVHLDH HHHRYHHDAI AASSSTVDHG CYAACSNPEV TQQHTTITMR RSPFADVATD
201: CSSSSYASSM DNISRLLDGF MKSSPPTATD VKPNIAVFSD PFMSFDRMTG AGAGLAFVPG VQQQQQQMPV LMGGMIYDDE ATGQQQQLQH QLPLCSIEKW
301: LLDEAAEQVA DLMELSDGDC SSLPLLY
001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
Arabidopsis Description
MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.