Factsheet for TraesCS5A01G142500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G141200.1	Wheat	nucleus	96.9	95.72
TraesCS5D01G149600.1	Wheat	nucleus	95.36	94.19
HORVU5Hr1G045540.1	Barley	nucleus	94.12	92.97
CDX93535	Canola	nucleus	21.98	85.54
HORVU5Hr1G045550.1	Barley	nucleus	94.12	83.98
CDX95030	Canola	nucleus	28.79	81.58
KRH37834	Soybean	nucleus	21.05	57.63
Zm00001d052397_P001	Maize	nucleus	58.2	55.13
Solyc10g081490.1.1	Tomato	nucleus	45.82	54.81
PGSC0003DMT400072272	Potato	nucleus	45.51	54.04
CDY31125	Canola	nucleus	43.03	52.45
Bra030743.1-P	Field mustard	nucleus	43.03	52.45
CDY32135	Canola	nucleus	42.72	51.69
Os11t0128500-01	Rice	nucleus	48.92	51.3
TraesCS4A01G189700.1	Wheat	nucleus	47.99	50.82
Os12t0125000-01	Rice	nucleus	48.61	50.48
OQU82780	Sorghum	nucleus	59.75	50.39
AT1G08810.1	Thale cress	nucleus	43.03	49.64
GSMUA_Achr7P21670_001	Banana	nucleus	43.34	48.44
Bra018598.1-P	Field mustard	nucleus	41.8	47.87
TraesCS4A01G322200.1	Wheat	nucleus	41.49	47.52
TraesCS5A01G227400.1	Wheat	nucleus	43.34	44.03
VIT_08s0056g00800.t01	Wine grape	nucleus	43.03	43.3
TraesCS2A01G157600.1	Wheat	nucleus	39.94	41.08
GSMUA_Achr10P...	Banana	nucleus	38.39	39.37
CDX95031	Canola	nucleus, plastid	10.53	21.94
TraesCS5A01G079100.1	Wheat	nucleus	19.5	18.37

Protein Annotations

EnsemblPlants:TraesCS5A01G142500.1	EnsemblPlantsGene:TraesCS5A01G142500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:316085021..316086110

Molecular Weight (calculated)

35616.2 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.411

Length

323 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PINTGLMRCS KSCRLRWTNY LRPGIRRGNF TTHEEGIIVH LQSLLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKQQ AMGAIFAPPP PPSSSAETAA NLPAAVHLDN HHHRYHHDAI AASSSTVDHG CYSNPEITQH TTITMRRSPF ADVAADCSSS
201: SYASSMDNIS RLLGGFMKSS PPTATDVKPN IAVVTDPFMS FDRISGTGAE LAFVPGVQQL QQQPVLMGGI SYDDEATRQQ QQQLHHQLPL CSIEKWLLDE
301: AAEQVADLME LSDGGCSSLP LLY

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.