Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93535 | Canola | nucleus | 71.05 | 97.59 |
| CDY31125 | Canola | nucleus | 92.98 | 40.0 |
| CDY32135 | Canola | nucleus | 92.11 | 39.33 |
| CDY30719 | Canola | nucleus | 85.09 | 36.19 |
| GSMUA_Achr9P17050_001 | Banana | nucleus | 87.72 | 35.84 |
| CDY00289 | Canola | nucleus | 85.09 | 35.02 |
| GSMUA_Achr3P09450_001 | Banana | nucleus | 86.84 | 34.26 |
| GSMUA_Achr10P... | Banana | nucleus | 85.96 | 34.03 |
| GSMUA_Achr5P07720_001 | Banana | nucleus | 85.96 | 33.22 |
| CDY16773 | Canola | nucleus | 85.09 | 32.88 |
| GSMUA_Achr10P... | Banana | nucleus | 82.46 | 32.87 |
| Zm00001d023282_P001 | Maize | nucleus | 82.46 | 32.53 |
| TraesCS4D01G123300.1 | Wheat | nucleus | 83.33 | 31.67 |
| TraesCS4B01G129100.1 | Wheat | nucleus | 83.33 | 31.56 |
| Os11t0128500-01 | Rice | nucleus | 85.09 | 31.49 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 83.33 | 31.46 |
| Os12t0125000-01 | Rice | nucleus | 85.09 | 31.19 |
| TraesCS4A01G189700.1 | Wheat | nucleus | 82.46 | 30.82 |
| CDY04044 | Canola | nucleus | 84.21 | 30.57 |
| KXG22874 | Sorghum | nucleus | 84.21 | 30.09 |
| CDY44428 | Canola | nucleus | 84.21 | 29.45 |
| CDX96557 | Canola | nucleus | 85.09 | 29.13 |
| CDX68173 | Canola | nucleus | 82.46 | 29.1 |
| CDX73103 | Canola | nucleus | 84.21 | 29.0 |
| CDX87250 | Canola | nucleus | 85.09 | 28.96 |
| CDY69264 | Canola | nucleus | 84.21 | 28.92 |
| CDX86405 | Canola | nucleus | 84.21 | 28.83 |
| CDX86406 | Canola | nucleus | 84.21 | 28.83 |
| TraesCS5A01G142500.1 | Wheat | nucleus | 81.58 | 28.79 |
| CDX85848 | Canola | nucleus | 81.58 | 28.7 |
| CDX85227 | Canola | nucleus | 83.33 | 28.53 |
| TraesCS5D01G149600.1 | Wheat | nucleus | 81.58 | 28.44 |
| TraesCS5B01G141200.1 | Wheat | nucleus | 81.58 | 28.44 |
| HORVU5Hr1G045540.1 | Barley | nucleus | 81.58 | 28.44 |
| CDY00107 | Canola | nucleus | 84.21 | 28.4 |
| Zm00001d052397_P001 | Maize | nucleus | 84.21 | 28.15 |
| KXG22875 | Sorghum | nucleus | 77.19 | 27.59 |
| Zm00001d023284_P001 | Maize | nucleus | 67.54 | 27.02 |
| Zm00001d023287_P001 | Maize | nucleus | 70.18 | 26.76 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 81.58 | 25.69 |
| OQU82780 | Sorghum | nucleus | 85.09 | 25.33 |
| CDY07778 | Canola | nucleus | 35.96 | 11.82 |
| CDX79747 | Canola | nucleus | 35.09 | 11.49 |
| CDX91374 | Canola | nucleus | 35.96 | 11.48 |
| CDX74943 | Canola | nucleus | 35.96 | 11.2 |
| CDX95031 | Canola | nucleus, plastid | 0.0 | 0.0 |
| CDY64733 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX95030 | EnsemblPlantsGene:GSBRNA2T00100548001 | Gene3D:1.10.10.60 | GO:A0A078E0B8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF726 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX95030 | ProteinID:CDX95030.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDE7A8 | MapMan:15.5.2.1 | : | : |
Description
BnaC05g06410D
Coordinates
chrLK031886:+:782879..783994
Molecular Weight (calculated)
13100.8 Da
IEP (calculated)
9.026
GRAVY (calculated)
-0.573
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPSCCEKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTTTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGLCWE GMIIHLQALL GNKWASIASY
101: LPQRTDNDIK NYWN
101: LPQRTDNDIK NYWN
001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
Arabidopsis Description
MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.