CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	28.36	91.57
CDX95030	Canola	nucleus	36.19	85.09
CDY00289	Canola	nucleus	87.69	84.84
CDY16773	Canola	nucleus	91.42	83.05
Bra029258.1-P	Field mustard	nucleus	99.25	77.55
CDX87250	Canola	nucleus	91.79	73.43
CDY69264	Canola	nucleus	86.19	69.58
AT5G62470.2	Thale cress	nucleus	87.31	66.48
KRG94429	Soybean	nucleus	21.27	66.28
CDY31125	Canola	nucleus	48.13	48.68
KRH66212	Soybean	cytosol	27.24	48.34
CDY32135	Canola	nucleus	47.76	47.94
CDY04044	Canola	nucleus	54.48	46.5
CDX85848	Canola	nucleus	54.48	45.06
CDX96557	Canola	nucleus	55.97	45.05
CDX73103	Canola	nucleus	55.6	45.02
KRH40103	Soybean	nucleus	55.6	44.88
CDY44428	Canola	nucleus	54.48	44.79
CDX86406	Canola	nucleus	55.6	44.74
CDX86405	Canola	nucleus	55.6	44.74
CDX68173	Canola	nucleus	53.73	44.58
CDX85227	Canola	nucleus	55.22	44.44
KRH01168	Soybean	nucleus	55.22	44.31
CDY00107	Canola	nucleus	55.6	44.08
KRG93528	Soybean	nucleus	54.1	43.03
KRH18478	Soybean	nucleus	53.36	42.94
CDY64733	Canola	nucleus	16.04	20.77
CDX95031	Canola	nucleus, plastid	9.7	16.77
CDY07778	Canola	nucleus	20.15	15.56
CDX79747	Canola	nucleus	19.78	15.23
CDX91374	Canola	nucleus	19.78	14.85
CDX74943	Canola	nucleus	20.15	14.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078GZV0	UniProt:A0A078GZV0	EnsemblPlants:CDY30719	ProteinID:CDY30719
ProteinID:CDY30719.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00046065001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE89AD	SEG:seg

Description

BnaA02g33410DBnaA02g33410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZV0]

Coordinates

chrLK032258:-:289451..290981

Molecular Weight (calculated)

30261.7 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.576

Length

268 amino acids

Sequence
(BLAST)

001: MGRPPCCEKT GVKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESDKKPSSSP VIIPQNIPSF SSVLLDNWVY ASSAENIARL LQDFMKDTPK PLTLTSSSPI SETGPLASAA SEEGGEGFEQ
201: SFFSFNSMEE TQNLTQETNF FHDQESKPAI TMDHDFGLIS QGSLSLLEKW LFDENMVGMS LEGQEAIF

Best Arabidopsis Sequence Match ( AT5G62470.2 )
(BLAST)

001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF

Arabidopsis Description

MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.