CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96557	Canola	nucleus	95.17	94.59
CDX93535	Canola	nucleus	22.66	90.36
CDX95030	Canola	nucleus	29.0	84.21
CDX68173	Canola	nucleus	80.97	82.97
CDX85848	Canola	nucleus	80.66	82.41
AT1G74650.1	Thale cress	nucleus	81.57	81.82
CDY64733	Canola	nucleus	45.02	71.98
KRH63348	Soybean	nucleus	54.98	57.05
CDY30719	Canola	nucleus	45.02	55.6
KRH54550	Soybean	nucleus	55.89	55.56
KRH56914	Soybean	nucleus	53.17	55.17
KRH03474	Soybean	nucleus	52.87	53.85
CDY16773	Canola	nucleus	47.73	53.56
CDY69264	Canola	nucleus	52.87	52.71
CDY00289	Canola	nucleus	43.81	52.35
CDX87250	Canola	nucleus	52.57	51.94
CDY31125	Canola	nucleus	41.39	51.7
CDY32135	Canola	nucleus	41.69	51.69
PGSC0003DMT400083076	Potato	nucleus	56.5	49.87
CDY04044	Canola	nucleus	46.83	49.36
Solyc06g069850.2.1	Tomato	nucleus	55.89	49.07
CDX86406	Canola	nucleus	48.64	48.35
CDX86405	Canola	nucleus	48.64	48.35
CDY44428	Canola	nucleus	47.43	48.16
CDX85227	Canola	nucleus	48.34	48.05
CDY00107	Canola	nucleus	48.64	47.63
CDY07778	Canola	nucleus	17.22	16.43
CDX91374	Canola	nucleus	17.52	16.25
CDX95031	Canola	nucleus, plastid	7.55	16.13
CDX74943	Canola	nucleus	17.82	16.12
CDX79747	Canola	nucleus	16.92	16.09

Protein Annotations

EnsemblPlants:CDX73103	EnsemblPlantsGene:GSBRNA2T00103569001	Gene3D:1.10.10.60	GO:A0A078CDU1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF922	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX73103	ProteinID:CDX73103.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF3F29	MapMan:15.5.2.1	:

Description

BnaC06g35510D

Coordinates

chrLK031797:+:2107018..2108735

Molecular Weight (calculated)

36906.0 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.766

Length

331 amino acids

Sequence
(BLAST)

001: MGRPPCCEKI VVKKGPWTPE EDITLVSYIQ QHGPGNWRSV PKNTGLLRCS KSCRLRWTNY LRPGIKRGNF TQHEEKTIIH LQALLGNRWA AIASYLSQRT
101: DNDIKNYWNT HLKKKLQRQN GITNEDNIDM TEMSSCNNNN NNICTNSKRI ANKGQWEKKL QTDINMAKQA LFQALSLDQP TSSISPDLGS PKPHHSATAT
201: YASSTDNISK LLQNWTSSSS SVPNTSSLSN NRSSSTGEGG VLDHQSLLSP NSESGSVDEK LNLMTETSIF KGVSKPIVDT EATTDDHSSL SLIEKWLFDD
301: QGMVQCDDDQ EDLIDVSLQG KNTDNNCQDV F

Best Arabidopsis Sequence Match ( AT1G74650.1 )
(BLAST)

001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK

Arabidopsis Description

ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.