Factsheet for PGSC0003DMT400083076

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069850.2.1	Tomato	nucleus	95.2	94.69
PGSC0003DMT400050287	Potato	nucleus	58.93	65.58
KRH63348	Soybean	nucleus	54.4	63.95
KRH56914	Soybean	nucleus	52.8	62.07
KRH54550	Soybean	nucleus	54.13	60.96
KRH03474	Soybean	nucleus	51.73	59.69
AT1G74650.1	Thale cress	nucleus	50.67	57.58
CDX85848	Canola	nucleus	49.33	57.1
CDX68173	Canola	nucleus	49.07	56.97
CDX73103	Canola	nucleus	49.87	56.5
CDX96557	Canola	nucleus	49.6	55.86
Bra015899.1-P	Field mustard	nucleus	49.6	55.86
Bra003793.1-P	Field mustard	nucleus	50.13	55.62
PGSC0003DMT400072272	Potato	nucleus	38.67	53.31
Bra008160.1-P	Field mustard	nucleus	48.0	53.1
PGSC0003DMT400017844	Potato	nucleus	46.13	52.42
PGSC0003DMT400003347	Potato	nucleus	43.73	51.57
PGSC0003DMT400022771	Potato	nucleus	19.73	20.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102603087	MapMan:15.5.2.1	GO:GO:0001666	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009626	GO:GO:0009628	GO:GO:0009719
GO:GO:0009723	GO:GO:0009733	GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987
GO:GO:0010200	GO:GO:0042761	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1D6F5	InterPro:Myb_dom
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400033043	PGSC:PGSC0003DMG400033043	EnsemblPlants:PGSC0003DMT400083076	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00029594D4	RefSeq:XP_006354829.1
SEG:seg	:	:	:	:	:

Description

MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400033043]

Coordinates

chr6:-:51677474..51679814

Molecular Weight (calculated)

41561.0 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.888

Length

375 amino acids

Sequence
(BLAST)

001: MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNNNK KVEGHDDNHD HQDGTSASSQ SKISKGQWER RLQTDIHTAK QALCDALSLD TTPNNNNNNP PPHDQEQQPS SVQTSTTTYA
201: SSAENIAKLL QNWMKNSPKS TSSSSSKITQ MSSLNNNLSI GAVSSSSPSE GTVNVTPGQG LDSLFSFNSS NNSDVSQSVS VDEGGNFSTP ENHNNNNNNA
301: GIFQVESKPN LPDFKPENGN FQVESKQNME TQQVPLTMLE KWLLDDANAQ AEQEDQLMGI GMGMGMTLAE TTDLF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.