Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73103 | Canola | nucleus | 81.82 | 81.57 |
| Bra015899.1-P | Field mustard | nucleus | 81.52 | 80.78 |
| CDX96557 | Canola | nucleus | 81.52 | 80.78 |
| CDX68173 | Canola | nucleus | 78.79 | 80.5 |
| CDX85848 | Canola | nucleus | 78.79 | 80.25 |
| Bra003793.1-P | Field mustard | nucleus | 81.82 | 79.88 |
| Bra008160.1-P | Field mustard | nucleus | 80.0 | 77.88 |
| KRH63348 | Soybean | nucleus | 55.76 | 57.68 |
| KRH54550 | Soybean | nucleus | 56.97 | 56.46 |
| KRH56914 | Soybean | nucleus | 53.94 | 55.8 |
| KRH03474 | Soybean | nucleus | 53.03 | 53.85 |
| AT3G47600.1 | Thale cress | nucleus | 53.94 | 53.45 |
| AT3G28910.1 | Thale cress | nucleus | 50.3 | 51.39 |
| AT5G62470.2 | Thale cress | nucleus | 54.24 | 50.85 |
| PGSC0003DMT400083076 | Potato | nucleus | 57.58 | 50.67 |
| Solyc06g069850.2.1 | Tomato | nucleus | 57.27 | 50.13 |
| AT1G08810.1 | Thale cress | nucleus | 42.42 | 50.0 |
| AT2G37630.1 | Thale cress | nucleus | 17.88 | 16.08 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:843804 | ProteinID:AAG52371.1 | ProteinID:AEE35618.1 | ArrayExpress:AT1G74650 |
| EnsemblPlantsGene:AT1G74650 | RefSeq:AT1G74650 | TAIR:AT1G74650 | RefSeq:AT1G74650-TAIR-G | EnsemblPlants:AT1G74650.1 | TAIR:AT1G74650.1 |
| Symbol:ATY13 | EMBL:BT029481 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_177603.1 |
| PFAM:PF00249 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF922 |
| UniProt:Q9CA52 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A144D | SEG:seg |
Description
ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
Coordinates
chr1:+:28041146..28043021
Molecular Weight (calculated)
36971.2 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.803
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.