Factsheet for AT3G28910.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44428	Canola	nucleus	89.78	88.96
Bra033067.1-P	Field mustard	nucleus	89.47	88.65
Bra025361.1-P	Field mustard	nucleus	90.4	87.69
CDX86405	Canola	nucleus	90.4	87.69
CDX86406	Canola	nucleus	90.09	87.39
CDY04044	Canola	nucleus	84.83	87.26
CDX85227	Canola	nucleus	89.78	87.09
VIT_14s0108g00830.t01	Wine grape	nucleus	58.51	57.8
VIT_17s0000g06190.t01	Wine grape	nucleus	53.56	56.35
AT3G47600.1	Thale cress	nucleus	53.25	51.65
AT1G74650.1	Thale cress	nucleus	51.39	50.3
AT5G62470.2	Thale cress	nucleus	54.18	49.72
AT1G08810.1	Thale cress	nucleus	43.03	49.64
AT2G37630.1	Thale cress	nucleus	18.89	16.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:822525	ProteinID:AEE77505.1	EMBL:AF250339	EMBL:AJ007289
ArrayExpress:AT3G28910	EnsemblPlantsGene:AT3G28910	RefSeq:AT3G28910	TAIR:AT3G28910	RefSeq:AT3G28910-TAIR-G	EnsemblPlants:AT3G28910.1
TAIR:AT3G28910.1	Symbol:ATMYB30	EMBL:AY081278	EMBL:AY114560	EMBL:AY519592	Unigene:At.10902
ProteinID:BAB02134.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0001666	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357
GO:GO:0006629	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009626	GO:GO:0009628
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009739	GO:GO:0009751	GO:GO:0009753
GO:GO:0009987	GO:GO:0030154	GO:GO:0042761	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_189533.1	PFAM:PF00249	PO:PO:0000013	PO:PO:0000037
PO:PO:0000263	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	UniProt:Q9SCU7	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000A31C9
SEG:seg	:	:	:	:	:

Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]

Coordinates

chr3:+:10911132..10913190

Molecular Weight (calculated)

35920.7 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.707

Length

323 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.