Factsheet for VIT_17s0000g06190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0039g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00830.t01	Wine grape	nucleus	70.36	66.06
AT3G28910.1	Thale cress	nucleus	56.35	53.56
CDY04044	Canola	nucleus	54.72	53.5
Bra025361.1-P	Field mustard	nucleus	57.0	52.55
CDX86405	Canola	nucleus	56.68	52.25
CDX86406	Canola	nucleus	56.68	52.25
CDX85227	Canola	nucleus	56.35	51.95
Bra033067.1-P	Field mustard	nucleus	54.72	51.53
CDY44428	Canola	nucleus	54.72	51.53
CDY00107	Canola	nucleus	56.03	50.89
Bra039040.1-P	Field mustard	nucleus	55.37	50.3
VIT_08s0056g00800.t01	Wine grape	nucleus	46.91	44.86
VIT_08s0007g00410.t01	Wine grape	nucleus	24.76	21.23
VIT_14s0083g00120.t01	Wine grape	nucleus	23.45	18.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233018	wikigene:100233018	MapMan:15.5.2.1	ProteinID:ABK59040	ProteinID:ABK59040.1
ProteinID:CCB43089	ProteinID:CCB43089.1	EMBL:EF071984	UniProt:F6GT80	EMBL:FN594950	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYB30	wikigene:MYB30	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC55544	TIGR:TC58683	UniParc:UPI00015C8C42	ArrayExpress:VIT_17s0000g06190	EnsemblPlantsGene:VIT_17s0000g06190
EnsemblPlants:VIT_17s0000g06190.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:6754044..6755968

Molecular Weight (calculated)

34451.1 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.733

Length

307 amino acids

Sequence
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLLRCS KSCRLRWTNY LRPGIKRGNF TDQEEKTIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKFP TGVDDHNQDG FSISKGQWER RLQTDIHMAK QALCEALSID TSSSLPDLKS SNGYNPNTRP VQASTYASSA ENIAKLLEGW
201: MRNSPKSTRT NSEATQNSKN SSEGATTPDA LDSLFSFNSS NSDLSLSNDE TANFTPETIL FQDESKPNLE TQVPLTMIEK WLFDEGAATQ EQEDLIDMSL
301: EDTAQLF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.