Factsheet for VIT_14s0083g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19380_001	Banana	nucleus	46.09	57.65
VIT_08s0007g00410.t01	Wine grape	nucleus	49.74	53.35
VIT_14s0108g00830.t01	Wine grape	nucleus	20.05	23.55
VIT_17s0000g06190.t01	Wine grape	nucleus	18.75	23.45
VIT_08s0056g00800.t01	Wine grape	nucleus	16.41	19.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100258292	wikigene:100258292	MapMan:15.5.2.1	ProteinID:CCB44041	ProteinID:CCB44041.1
ncoils:Coil	UniProt:F6GVQ6	EMBL:FN594955	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100258292	wikigene:LOC100258292	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF658	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC57503
TIGR:TC69669	UniParc:UPI00015C82D3	ArrayExpress:VIT_14s0083g00120	EnsemblPlantsGene:VIT_14s0083g00120	EnsemblPlants:VIT_14s0083g00120.t01	unigene:Vvi.12370
RefSeq:XP_002283242	RefSeq:XP_002283242.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:22042532..22044299

Molecular Weight (calculated)

43445.0 Da

IEP (calculated)

9.734

GRAVY (calculated)

-0.697

Length

384 amino acids

Sequence
(BLAST)

001: MKERQRWQPE EDALLRAYVK QYGAKEWNLI SHRMGKSLDR DPKSCLERWK NYLKPGIKKG SLTLEEQNLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW
101: EVFKEKQLKQ LHKTTHLRHD HSDSPSSNAV AAASASSPDH GKYDHILETF AEKYVQPKLL AFQPLPLPIM PNLSLSDPPP VLSLGSVGIS DAGVPVGSTT
201: PSPVLPAWMN ATNMGSTTSS ISSSSSTPSP SVSLSLSPSE PAVLDPVHPE ASRLMPVQQM GTLIQYCKEL EEGRQNWVQH KKEATWRLSR LEQQLESEKS
301: RKRREKTEEI EGKIRCLREE EMAHLGRIES EYREQLIAVQ RDAESKEAKL METWCSKHVK LAKLVEKIGI HTPTQAFTLP KDLH

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.